MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:717.3 nTPM
HPA Brain:720.9 nTPM
GTEx:717.3 nTPM
FANTOM5:762.6 Scaled Tags Per Million
Pig:710.1 nTPM
Mouse:616.2 nTPM
Allen mouse:12.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 720.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 576.7
2586 Male, age 75, left hemisphere 776.8
2828 Female, age 72, unknown 748.0
2666 Male, age 74, left hemisphere 586.0
2411 Female, age 72, unknown 583.3
1827 Male, age 72, unknown 565.2
1870 Female, age 42, unknown 561.5
2019 Male, age 18, unknown 532.8
1833 Male, age 53, unknown 527.9
1830 Male, age 51, unknown 498.9
2219 Male, age 76, both hemispheres 386.4
Dorsal raphe nucleus
nTPM: 715.4
2298 Female, age 72, unknown 881.5
2016 Female, age 72, unknown 823.5
1828 Male, age 53, unknown 649.3
2047 Male, age 72, unknown 630.5
2750 Male, age 76, both hemispheres 592.2
Inferior colliculus
nTPM: 563.4
2097 Female, age 72, unknown 638.1
1890 Male, age 53, unknown 565.2
1848 Female, age 42, unknown 552.6
2849 Male, age 72, unknown 497.6
Median raphe nucleus
nTPM: 462.3
2220 Male, age 76, midline 462.3
Periaquaductal grey, anterior
nTPM: 709.2
1795 Male, age 51, unknown 763.7
1947 Male, age 18, unknown 714.0
2502 Female, age 75, unknown 650.0
Periaquaductal grey, dorsal
nTPM: 664.6
2850 Male, age 76, both hemispheres 717.4
1840 Male, age 53, unknown 707.5
2464 Female, age 72, unknown 633.4
1831 Male, age 72, unknown 600.2
Periaquaductal grey, lateral
nTPM: 720.9
2140 Male, age 76, both hemispheres 798.9
2053 Male, age 18, unknown 686.8
2272 Male, age 74, both hemispheres 676.9
Pretectal area
nTPM: 626.3
2273 Male, age 74, both hemispheres 787.5
2316 Male, age 76, right hemisphere 679.6
2224 Female, age 72, unknown 674.2
2825 Male, age 18, unknown 634.6
1817 Female, age 42, unknown 631.0
2667 Female, age 75, unknown 627.1
1815 Male, age 53, unknown 610.7
1944 Female, age 72, unknown 599.5
1816 Male, age 51, unknown 574.7
2007 Male, age 72, unknown 570.6
2407 Male, age 75, both hemispheres 499.2
Red nucleus
nTPM: 593.9
2503 Female, age 72, unknown 701.1
2227 Male, age 72, unknown 677.2
2769 Male, age 72, unknown 655.2
1954 Female, age 42, unknown 624.0
1821 Female, age 72, unknown 610.9
1904 Male, age 53, unknown 607.6
2725 Female, age 75, unknown 601.1
1865 Male, age 51, unknown 598.9
2785 Male, age 18, unknown 565.3
2823 Male, age 76, right hemisphere 530.8
2588 Male, age 74, left hemisphere 511.2
2584 Male, age 75, left hemisphere 443.8
Substantia nigra
nTPM: 580.9
1916 Female, age 42, unknown 653.9
1851 Male, age 51, unknown 651.4
2590 Female, age 75, unknown 626.2
2699 Male, age 18, unknown 607.9
2665 Male, age 74, both hemispheres 581.2
2583 Male, age 75, right hemisphere 572.5
1889 Female, age 72, unknown 564.3
2241 Male, age 72, unknown 531.6
2409 Female, age 72, unknown 511.5
1941 Male, age 53, unknown 508.6
Superior colliculus
nTPM: 614.1
1995 Male, age 72, unknown 790.5
1796 Male, age 53, unknown 675.2
2261 Male, age 18, unknown 652.4
2087 Female, age 72, unknown 641.1
2664 Male, age 75, both hemispheres 627.3
1913 Female, age 42, unknown 612.2
2668 Female, age 75, unknown 594.7
2587 Male, age 74, left hemisphere 580.0
1839 Male, age 51, unknown 544.7
1895 Male, age 76, right hemisphere 422.6
Ventral tegmental area
nTPM: 616.1
1942 Male, age 51, unknown 681.4
2021 Male, age 53, unknown 674.0
2410 Female, age 72, unknown 648.9
1915 Female, age 42, unknown 623.0
2218 Male, age 76, both hemispheres 546.8
2223 Female, age 72, unknown 522.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 717.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 717.3
Samples: 139

Max nTPM: 1753.0
Min nTPM: 259.1
Std nTPM: 279.1
Median nTPM: 667.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1753.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1719.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1645.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1640.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1527.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1490.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1365.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1194.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1108.9
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 1083.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 1077.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 762.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 762.6
FF:10158-103A5 76 years, female 762.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 710.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 710.1
Samples: 4

Max nTPM: 805.9
Min nTPM: 566.8
Sample A Female 787.1
Sample B Female 566.8
Sample C Male 680.7
Sample D Male 805.9
Midbrain
nTPM: 630.2
Samples: 4

Max nTPM: 1058.4
Min nTPM: 435.9
Sample A Female 1058.4
Sample B Female 541.2
Sample C Male 485.1
Sample D Male 435.9
Periaqueductal gray
nTPM: 592.4
Samples: 3

Max nTPM: 696.0
Min nTPM: 530.5
Sample B Female 550.8
Sample C Male 696.0
Sample D Male 530.5
Superior colliculi
nTPM: 527.4
Samples: 4

Max nTPM: 672.6
Min nTPM: 369.1
Sample A Female 672.6
Sample B Female 369.1
Sample C Male 497.2
Sample D Male 570.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 616.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 616.2
Samples: 4

Max nTPM: 635.6
Min nTPM: 579.2
Sample A Male 628.8
Sample B Male 579.2
Sample C Female 621.3
Sample D Female 635.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.1
227 Antisense, RP_Baylor_102672, Mouse strain C57BL/6J (56 days, male) 12.1
68269526 Antisense, RP_041129_01_G04, Mouse strain C57BL/6J (56 days, male) 12.1
226 Antisense, RP_Baylor_102672, Mouse strain C57BL/6J (56 days, male) 9.0

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