MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:748.2 nTPM
HPA Brain:283.3 nTPM
GTEx:748.2 nTPM
FANTOM5:207.3 Scaled Tags Per Million
Pig:219.5 nTPM
Mouse:281.2 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 283.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 250.7
1870 Female, age 42, unknown 303.3
2411 Female, age 72, unknown 302.8
2666 Male, age 74, left hemisphere 258.5
1827 Male, age 72, unknown 247.0
1833 Male, age 53, unknown 245.6
1830 Male, age 51, unknown 235.9
2586 Male, age 75, left hemisphere 234.7
2019 Male, age 18, unknown 234.2
2828 Female, age 72, unknown 234.0
2219 Male, age 76, both hemispheres 210.7
Dorsal raphe nucleus
nTPM: 267.8
2298 Female, age 72, unknown 325.2
2016 Female, age 72, unknown 281.4
2750 Male, age 76, both hemispheres 253.8
1828 Male, age 53, unknown 248.3
2047 Male, age 72, unknown 230.2
Inferior colliculus
nTPM: 247.9
2097 Female, age 72, unknown 277.4
1890 Male, age 53, unknown 271.7
1848 Female, age 42, unknown 235.8
2849 Male, age 72, unknown 206.8
Median raphe nucleus
nTPM: 221.3
2220 Male, age 76, midline 221.3
Periaquaductal grey, anterior
nTPM: 275.6
2502 Female, age 75, unknown 337.5
1947 Male, age 18, unknown 258.9
1795 Male, age 51, unknown 230.3
Periaquaductal grey, dorsal
nTPM: 248.7
1831 Male, age 72, unknown 264.7
1840 Male, age 53, unknown 246.4
2850 Male, age 76, both hemispheres 243.6
2464 Female, age 72, unknown 240.1
Periaquaductal grey, lateral
nTPM: 244.2
2053 Male, age 18, unknown 298.7
2140 Male, age 76, both hemispheres 224.5
2272 Male, age 74, both hemispheres 209.3
Pretectal area
nTPM: 248.1
2316 Male, age 76, right hemisphere 302.2
2224 Female, age 72, unknown 269.9
1815 Male, age 53, unknown 261.4
1817 Female, age 42, unknown 259.4
1816 Male, age 51, unknown 254.1
2007 Male, age 72, unknown 250.8
1944 Female, age 72, unknown 243.1
2407 Male, age 75, both hemispheres 231.9
2825 Male, age 18, unknown 228.6
2667 Female, age 75, unknown 214.0
2273 Male, age 74, both hemispheres 213.8
Red nucleus
nTPM: 272.2
1821 Female, age 72, unknown 340.7
2503 Female, age 72, unknown 322.7
1865 Male, age 51, unknown 288.7
1904 Male, age 53, unknown 288.3
2769 Male, age 72, unknown 286.3
2584 Male, age 75, left hemisphere 276.7
2227 Male, age 72, unknown 262.9
2725 Female, age 75, unknown 251.0
2785 Male, age 18, unknown 247.7
2823 Male, age 76, right hemisphere 235.8
1954 Female, age 42, unknown 233.6
2588 Male, age 74, left hemisphere 232.2
Substantia nigra
nTPM: 283.3
1851 Male, age 51, unknown 352.5
2409 Female, age 72, unknown 333.8
2241 Male, age 72, unknown 313.4
2699 Male, age 18, unknown 300.8
2590 Female, age 75, unknown 287.0
1916 Female, age 42, unknown 279.0
2665 Male, age 74, both hemispheres 268.9
1889 Female, age 72, unknown 265.6
1941 Male, age 53, unknown 246.3
2583 Male, age 75, right hemisphere 186.1
Superior colliculus
nTPM: 269.6
2587 Male, age 74, left hemisphere 328.4
1913 Female, age 42, unknown 308.6
1995 Male, age 72, unknown 297.3
2261 Male, age 18, unknown 264.9
2668 Female, age 75, unknown 261.3
1839 Male, age 51, unknown 255.1
1796 Male, age 53, unknown 251.0
2664 Male, age 75, both hemispheres 246.4
1895 Male, age 76, right hemisphere 245.1
2087 Female, age 72, unknown 238.0
Ventral tegmental area
nTPM: 277.9
2410 Female, age 72, unknown 306.2
1915 Female, age 42, unknown 305.6
2021 Male, age 53, unknown 294.1
2223 Female, age 72, unknown 281.0
1942 Male, age 51, unknown 261.0
2218 Male, age 76, both hemispheres 219.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 748.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 748.2
Samples: 139

Max nTPM: 2158.3
Min nTPM: 271.9
Std nTPM: 303.8
Median nTPM: 673.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2158.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1996.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1688.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1655.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1370.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1364.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1347.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1326.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1241.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 1215.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1178.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 207.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 207.3
FF:10158-103A5 76 years, female 207.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 219.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 209.9
Samples: 4

Max nTPM: 222.7
Min nTPM: 198.4
Sample A Female 212.8
Sample B Female 205.7
Sample C Male 198.4
Sample D Male 222.7
Midbrain
nTPM: 211.6
Samples: 4

Max nTPM: 247.7
Min nTPM: 174.1
Sample A Female 247.7
Sample B Female 200.1
Sample C Male 224.6
Sample D Male 174.1
Periaqueductal gray
nTPM: 184.5
Samples: 3

Max nTPM: 212.8
Min nTPM: 164.6
Sample B Female 164.6
Sample C Male 212.8
Sample D Male 176.0
Superior colliculi
nTPM: 219.5
Samples: 4

Max nTPM: 246.4
Min nTPM: 202.1
Sample A Female 216.1
Sample B Female 202.1
Sample C Male 246.4
Sample D Male 213.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 281.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 281.3
Samples: 4

Max nTPM: 326.7
Min nTPM: 224.6
Sample A Male 326.7
Sample B Male 294.0
Sample C Female 224.6
Sample D Female 279.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68301867 Antisense, RP_041130_02_A01, Mouse strain C57BL/6J (56 days, male) 0.2

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