MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:69.6 nTPM
HPA Brain:47.3 nTPM
GTEx:69.6 nTPM
FANTOM5:55.1 Scaled Tags Per Million
Pig:25.0 nTPM
Mouse:111.6 nTPM
Allen mouse:3.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.7
2411 Female, age 72, unknown 47.9
2586 Male, age 75, left hemisphere 46.7
1870 Female, age 42, unknown 46.5
1827 Male, age 72, unknown 45.5
2666 Male, age 74, left hemisphere 45.5
2019 Male, age 18, unknown 45.2
2828 Female, age 72, unknown 43.6
1830 Male, age 51, unknown 43.1
1833 Male, age 53, unknown 42.9
2219 Male, age 76, both hemispheres 40.4
Dorsal raphe nucleus
nTPM: 39.8
2750 Male, age 76, both hemispheres 43.0
2298 Female, age 72, unknown 42.3
1828 Male, age 53, unknown 39.3
2047 Male, age 72, unknown 38.3
2016 Female, age 72, unknown 36.2
Inferior colliculus
nTPM: 43.5
1890 Male, age 53, unknown 44.1
2097 Female, age 72, unknown 43.6
2849 Male, age 72, unknown 43.5
1848 Female, age 42, unknown 43.0
Median raphe nucleus
nTPM: 39.2
2220 Male, age 76, midline 39.2
Periaquaductal grey, anterior
nTPM: 46.0
2502 Female, age 75, unknown 52.2
1947 Male, age 18, unknown 44.1
1795 Male, age 51, unknown 41.8
Periaquaductal grey, dorsal
nTPM: 37.6
2464 Female, age 72, unknown 41.8
1840 Male, age 53, unknown 37.9
1831 Male, age 72, unknown 36.5
2850 Male, age 76, both hemispheres 34.1
Periaquaductal grey, lateral
nTPM: 37.3
2053 Male, age 18, unknown 37.5
2272 Male, age 74, both hemispheres 37.3
2140 Male, age 76, both hemispheres 37.2
Pretectal area
nTPM: 40.7
2007 Male, age 72, unknown 46.5
1817 Female, age 42, unknown 46.3
2667 Female, age 75, unknown 43.2
1816 Male, age 51, unknown 42.1
1815 Male, age 53, unknown 41.9
1944 Female, age 72, unknown 40.9
2316 Male, age 76, right hemisphere 40.8
2825 Male, age 18, unknown 40.0
2224 Female, age 72, unknown 36.7
2407 Male, age 75, both hemispheres 36.5
2273 Male, age 74, both hemispheres 33.0
Red nucleus
nTPM: 47.3
1865 Male, age 51, unknown 52.6
1904 Male, age 53, unknown 51.9
1821 Female, age 72, unknown 51.5
2769 Male, age 72, unknown 50.1
2227 Male, age 72, unknown 49.4
2785 Male, age 18, unknown 48.1
2503 Female, age 72, unknown 47.6
2588 Male, age 74, left hemisphere 46.8
1954 Female, age 42, unknown 43.7
2584 Male, age 75, left hemisphere 43.1
2823 Male, age 76, right hemisphere 42.0
2725 Female, age 75, unknown 40.3
Substantia nigra
nTPM: 43.8
1851 Male, age 51, unknown 49.6
1916 Female, age 42, unknown 49.1
2409 Female, age 72, unknown 48.6
2665 Male, age 74, both hemispheres 46.2
1889 Female, age 72, unknown 44.5
2699 Male, age 18, unknown 42.5
1941 Male, age 53, unknown 41.4
2590 Female, age 75, unknown 40.3
2583 Male, age 75, right hemisphere 39.2
2241 Male, age 72, unknown 36.2
Superior colliculus
nTPM: 41.7
1913 Female, age 42, unknown 44.8
1796 Male, age 53, unknown 44.5
2668 Female, age 75, unknown 43.3
2261 Male, age 18, unknown 43.2
2587 Male, age 74, left hemisphere 43.1
1895 Male, age 76, right hemisphere 41.2
1839 Male, age 51, unknown 41.0
1995 Male, age 72, unknown 40.9
2664 Male, age 75, both hemispheres 37.7
2087 Female, age 72, unknown 37.3
Ventral tegmental area
nTPM: 42.4
2410 Female, age 72, unknown 48.8
2223 Female, age 72, unknown 45.3
1915 Female, age 42, unknown 44.7
2218 Male, age 76, both hemispheres 41.4
2021 Male, age 53, unknown 37.5
1942 Male, age 51, unknown 36.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 69.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 69.6
Samples: 139

Max nTPM: 137.8
Min nTPM: 37.5
Std nTPM: 16.2
Median nTPM: 66.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 137.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 119.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 113.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 111.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 109.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 108.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 104.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 102.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 101.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 96.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 93.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.1
FF:10158-103A5 76 years, female 55.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.7
Samples: 4

Max nTPM: 28.0
Min nTPM: 16.1
Sample A Female 28.0
Sample B Female 16.1
Sample C Male 16.6
Sample D Male 18.1
Midbrain
nTPM: 24.0
Samples: 4

Max nTPM: 36.2
Min nTPM: 18.7
Sample A Female 36.2
Sample B Female 20.7
Sample C Male 18.7
Sample D Male 20.3
Periaqueductal gray
nTPM: 15.8
Samples: 3

Max nTPM: 16.6
Min nTPM: 14.5
Sample B Female 16.6
Sample C Male 16.2
Sample D Male 14.5
Superior colliculi
nTPM: 25.0
Samples: 4

Max nTPM: 34.5
Min nTPM: 20.4
Sample A Female 34.5
Sample B Female 22.8
Sample C Male 22.4
Sample D Male 20.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 111.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 111.6
Samples: 4

Max nTPM: 120.1
Min nTPM: 99.3
Sample A Male 117.9
Sample B Male 109.2
Sample C Female 99.3
Sample D Female 120.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
69526456 Antisense, RP_050419_04_H03, Mouse strain C57BL/6J (56 days, male) 3.3

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