MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:144.1 nTPM
HPA Brain:101.9 nTPM
GTEx:144.1 nTPM
FANTOM5:106.0 Scaled Tags Per Million
Pig:131.3 nTPM
Mouse:169.6 nTPM
Allen mouse:8.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 101.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 90.2
2019 Male, age 18, unknown 105.4
2586 Male, age 75, left hemisphere 98.0
2411 Female, age 72, unknown 96.5
1827 Male, age 72, unknown 91.5
2219 Male, age 76, both hemispheres 89.8
2666 Male, age 74, left hemisphere 89.5
2828 Female, age 72, unknown 88.9
1833 Male, age 53, unknown 83.3
1870 Female, age 42, unknown 82.1
1830 Male, age 51, unknown 77.2
Dorsal raphe nucleus
nTPM: 94.4
2298 Female, age 72, unknown 112.5
1828 Male, age 53, unknown 97.7
2047 Male, age 72, unknown 97.5
2750 Male, age 76, both hemispheres 87.3
2016 Female, age 72, unknown 76.9
Inferior colliculus
nTPM: 95.0
2097 Female, age 72, unknown 105.2
1890 Male, age 53, unknown 94.1
1848 Female, age 42, unknown 91.6
2849 Male, age 72, unknown 89.1
Median raphe nucleus
nTPM: 88.3
2220 Male, age 76, midline 88.3
Periaquaductal grey, anterior
nTPM: 99.2
1795 Male, age 51, unknown 101.1
1947 Male, age 18, unknown 98.3
2502 Female, age 75, unknown 98.3
Periaquaductal grey, dorsal
nTPM: 81.7
1840 Male, age 53, unknown 90.6
2850 Male, age 76, both hemispheres 79.5
1831 Male, age 72, unknown 79.2
2464 Female, age 72, unknown 77.4
Periaquaductal grey, lateral
nTPM: 86.4
2272 Male, age 74, both hemispheres 106.0
2053 Male, age 18, unknown 79.9
2140 Male, age 76, both hemispheres 73.5
Pretectal area
nTPM: 101.9
2007 Male, age 72, unknown 129.6
1817 Female, age 42, unknown 126.5
1944 Female, age 72, unknown 114.2
1816 Male, age 51, unknown 112.6
2667 Female, age 75, unknown 111.2
2273 Male, age 74, both hemispheres 101.3
2224 Female, age 72, unknown 95.8
1815 Male, age 53, unknown 95.3
2316 Male, age 76, right hemisphere 83.2
2825 Male, age 18, unknown 82.3
2407 Male, age 75, both hemispheres 68.9
Red nucleus
nTPM: 92.2
2725 Female, age 75, unknown 106.9
2785 Male, age 18, unknown 105.9
2503 Female, age 72, unknown 102.4
1821 Female, age 72, unknown 100.4
2769 Male, age 72, unknown 93.4
1904 Male, age 53, unknown 93.1
2588 Male, age 74, left hemisphere 89.9
2227 Male, age 72, unknown 89.7
1865 Male, age 51, unknown 87.8
1954 Female, age 42, unknown 87.4
2823 Male, age 76, right hemisphere 79.0
2584 Male, age 75, left hemisphere 70.0
Substantia nigra
nTPM: 101.5
1916 Female, age 42, unknown 137.3
1889 Female, age 72, unknown 113.7
2665 Male, age 74, both hemispheres 113.5
1851 Male, age 51, unknown 111.8
1941 Male, age 53, unknown 106.0
2699 Male, age 18, unknown 93.3
2409 Female, age 72, unknown 90.2
2583 Male, age 75, right hemisphere 86.8
2241 Male, age 72, unknown 82.8
2590 Female, age 75, unknown 79.5
Superior colliculus
nTPM: 87.7
2087 Female, age 72, unknown 99.1
1796 Male, age 53, unknown 96.9
2261 Male, age 18, unknown 90.8
1839 Male, age 51, unknown 90.7
2587 Male, age 74, left hemisphere 89.8
2668 Female, age 75, unknown 85.7
1995 Male, age 72, unknown 84.4
1913 Female, age 42, unknown 80.6
1895 Male, age 76, right hemisphere 79.8
2664 Male, age 75, both hemispheres 78.7
Ventral tegmental area
nTPM: 98.3
2410 Female, age 72, unknown 118.7
1915 Female, age 42, unknown 107.9
2218 Male, age 76, both hemispheres 107.4
1942 Male, age 51, unknown 89.0
2223 Female, age 72, unknown 86.5
2021 Male, age 53, unknown 80.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 144.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 144.1
Samples: 139

Max nTPM: 290.3
Min nTPM: 64.5
Std nTPM: 37.2
Median nTPM: 140.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 290.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 265.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 248.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 226.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 219.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 215.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 209.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 207.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 206.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 203.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 201.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 106.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 106.0
FF:10158-103A5 76 years, female 106.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 131.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 106.8
Samples: 4

Max nTPM: 153.4
Min nTPM: 82.6
Sample A Female 153.4
Sample B Female 87.6
Sample C Male 103.5
Sample D Male 82.6
Midbrain
nTPM: 120.0
Samples: 4

Max nTPM: 151.3
Min nTPM: 104.0
Sample A Female 151.3
Sample B Female 110.3
Sample C Male 114.5
Sample D Male 104.0
Periaqueductal gray
nTPM: 85.2
Samples: 3

Max nTPM: 93.3
Min nTPM: 74.9
Sample B Female 87.4
Sample C Male 93.3
Sample D Male 74.9
Superior colliculi
nTPM: 131.3
Samples: 4

Max nTPM: 161.7
Min nTPM: 109.6
Sample A Female 161.7
Sample B Female 109.6
Sample C Male 141.5
Sample D Male 112.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 169.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 169.6
Samples: 4

Max nTPM: 193.7
Min nTPM: 151.0
Sample A Male 193.7
Sample B Male 159.8
Sample C Female 151.0
Sample D Female 174.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.0
68910967 Antisense, RP_050118_01_A01, Mouse strain C57BL/6J (56 days, male) 8.0
74819243 Antisense, RP_060315_02_C07, Mouse strain C57BL/6J (56 days, male) 8.0

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