MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.8 nTPM
HPA Brain:65.1 nTPM
GTEx:22.8 nTPM
FANTOM5:74.5 Scaled Tags Per Million
Pig:49.7 nTPM
Mouse:47.0 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 65.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.4
2586 Male, age 75, left hemisphere 75.9
2019 Male, age 18, unknown 61.4
1833 Male, age 53, unknown 59.9
2411 Female, age 72, unknown 58.2
2828 Female, age 72, unknown 57.3
2666 Male, age 74, left hemisphere 57.2
1830 Male, age 51, unknown 56.3
1870 Female, age 42, unknown 55.3
2219 Male, age 76, both hemispheres 51.6
1827 Male, age 72, unknown 51.2
Dorsal raphe nucleus
nTPM: 61.1
2298 Female, age 72, unknown 65.4
1828 Male, age 53, unknown 62.5
2047 Male, age 72, unknown 60.8
2016 Female, age 72, unknown 59.4
2750 Male, age 76, both hemispheres 57.2
Inferior colliculus
nTPM: 55.2
1890 Male, age 53, unknown 58.8
1848 Female, age 42, unknown 54.5
2849 Male, age 72, unknown 54.5
2097 Female, age 72, unknown 53.0
Median raphe nucleus
nTPM: 63.7
2220 Male, age 76, midline 63.7
Periaquaductal grey, anterior
nTPM: 59.3
1947 Male, age 18, unknown 62.2
2502 Female, age 75, unknown 57.9
1795 Male, age 51, unknown 57.7
Periaquaductal grey, dorsal
nTPM: 58.9
1840 Male, age 53, unknown 64.1
2850 Male, age 76, both hemispheres 62.6
2464 Female, age 72, unknown 55.4
1831 Male, age 72, unknown 53.7
Periaquaductal grey, lateral
nTPM: 54.2
2140 Male, age 76, both hemispheres 60.7
2053 Male, age 18, unknown 51.1
2272 Male, age 74, both hemispheres 50.9
Pretectal area
nTPM: 54.0
2667 Female, age 75, unknown 59.8
2825 Male, age 18, unknown 58.7
2224 Female, age 72, unknown 57.3
1816 Male, age 51, unknown 56.1
2407 Male, age 75, both hemispheres 55.2
2273 Male, age 74, both hemispheres 53.9
1815 Male, age 53, unknown 52.5
1817 Female, age 42, unknown 52.5
1944 Female, age 72, unknown 50.6
2007 Male, age 72, unknown 49.7
2316 Male, age 76, right hemisphere 47.5
Red nucleus
nTPM: 58.5
2584 Male, age 75, left hemisphere 67.0
1954 Female, age 42, unknown 64.6
2588 Male, age 74, left hemisphere 60.8
1904 Male, age 53, unknown 60.5
1821 Female, age 72, unknown 59.3
2725 Female, age 75, unknown 58.4
2769 Male, age 72, unknown 57.7
2227 Male, age 72, unknown 57.4
2785 Male, age 18, unknown 56.2
1865 Male, age 51, unknown 55.3
2503 Female, age 72, unknown 55.0
2823 Male, age 76, right hemisphere 49.4
Substantia nigra
nTPM: 65.1
2241 Male, age 72, unknown 88.0
1916 Female, age 42, unknown 69.2
2583 Male, age 75, right hemisphere 68.9
1851 Male, age 51, unknown 68.5
2665 Male, age 74, both hemispheres 68.1
2409 Female, age 72, unknown 66.1
2699 Male, age 18, unknown 59.9
2590 Female, age 75, unknown 55.7
1941 Male, age 53, unknown 54.3
1889 Female, age 72, unknown 52.4
Superior colliculus
nTPM: 52.8
2664 Male, age 75, both hemispheres 61.9
2668 Female, age 75, unknown 56.0
1995 Male, age 72, unknown 54.2
1839 Male, age 51, unknown 53.2
1913 Female, age 42, unknown 52.0
2087 Female, age 72, unknown 51.5
2261 Male, age 18, unknown 51.3
1796 Male, age 53, unknown 51.0
2587 Male, age 74, left hemisphere 50.1
1895 Male, age 76, right hemisphere 47.1
Ventral tegmental area
nTPM: 61.2
1915 Female, age 42, unknown 64.9
2410 Female, age 72, unknown 62.6
2223 Female, age 72, unknown 61.6
1942 Male, age 51, unknown 61.3
2021 Male, age 53, unknown 60.3
2218 Male, age 76, both hemispheres 56.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.8
Samples: 139

Max nTPM: 37.9
Min nTPM: 13.2
Std nTPM: 4.6
Median nTPM: 21.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 37.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 37.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 36.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 34.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 33.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 33.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 32.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 32.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 30.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 30.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 29.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 74.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 74.5
FF:10158-103A5 76 years, female 74.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 49.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 49.8
Samples: 4

Max nTPM: 57.8
Min nTPM: 38.6
Sample A Female 55.2
Sample B Female 47.4
Sample C Male 57.8
Sample D Male 38.6
Midbrain
nTPM: 45.0
Samples: 4

Max nTPM: 50.7
Min nTPM: 37.3
Sample A Female 50.7
Sample B Female 42.3
Sample C Male 49.5
Sample D Male 37.3
Periaqueductal gray
nTPM: 39.9
Samples: 3

Max nTPM: 43.3
Min nTPM: 36.6
Sample B Female 39.7
Sample C Male 43.3
Sample D Male 36.6
Superior colliculi
nTPM: 42.6
Samples: 4

Max nTPM: 46.0
Min nTPM: 40.3
Sample A Female 42.4
Sample B Female 46.0
Sample C Male 40.3
Sample D Male 41.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 47.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 47.1
Samples: 4

Max nTPM: 51.9
Min nTPM: 41.6
Sample A Male 41.6
Sample B Male 45.1
Sample C Female 51.9
Sample D Female 49.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
73732149 Antisense, RP_051121_04_A07, Mouse strain C57BL/6J (56 days, male) 4.6
68151390 Antisense, RP_041116_01_B01, Mouse strain C57BL/6J (56 days, male) 1.0
70474929 Antisense, RP_050623_01_D07, Mouse strain C57BL/6J (56 days, male) 0.5
73930854 Antisense, RP_051214_04_D07, Mouse strain C57BL/6J (56 days, male) 0.3

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