HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:15.0 nTPM
HPA Brain:49.3 nTPM
GTEx:15.0 nTPM
FANTOM5:14.0 Scaled Tags Per Million
Pig:10.5 nTPM
Mouse:10.5 nTPM
Allen mouse:8.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA018503
Glial cells Low
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 49.3
Sample id Sample description nTPM
Hippocampus
nTPM: 40.7
1898 Male, age 80, left hemisphere 49.0
1855 Male, age 76, left hemisphere 41.8
2148 Female, age 91, left hemisphere 40.4
2621 Female, age 67, right hemisphere 40.2
1911 Female, age 85, right hemisphere 39.1
2529 Female, age 94, left hemisphere 33.7
Dentate gyrus
nTPM: 42.1
1927 Female, age 91, both hemispheres 54.3
2531 Female, age 67, both hemispheres 48.6
2246 Female, age 85, both hemispheres 41.4
2010 Male, age 76, both hemispheres 39.0
2530 Female, age 94, left hemisphere 38.3
2528 Male, age 74, both hemispheres 30.9
Entorhinal gyrus
nTPM: 45.8
2764 Male, age 80, right hemisphere 53.7
2613 Female, age 94, left hemisphere 51.4
2686 Male, age 75, right hemisphere 46.9
1938 Female, age 85, left hemisphere 43.0
1787 Male, age 76, left hemisphere 41.8
2117 Female, age 91, right hemisphere 37.9
Hippocampus, CA1
nTPM: 45.8
2749 Male, age 80, left hemisphere 69.1
2045 Male, age 76, both hemispheres 44.8
1873 Female, age 85, both hemispheres 44.3
2082 Female, age 91, right hemisphere 37.1
2527 Male, age 74, both hemispheres 33.9
Hippocampus, CA2
nTPM: 39.8
1892 Male, age 76, both hemispheres 48.1
1963 Male, age 80, left hemisphere 45.5
1940 Female, age 85, left hemisphere 39.1
2437 Female, age 94, left hemisphere 36.6
2113 Female, age 91, right hemisphere 35.5
2249 Male, age 74, both hemispheres 34.1
Hippocampus, CA3
nTPM: 49.3
2137 Male, age 80, left hemisphere 60.2
2620 Female, age 94, left hemisphere 53.8
1867 Male, age 76, both hemispheres 50.8
2861 Female, age 67, both hemispheres 46.6
2436 Male, age 74, both hemispheres 43.0
1891 Female, age 85, both hemispheres 41.5
Parahippocampal cortex
nTPM: 44.5
1850 Male, age 80, both hemispheres 48.2
1933 Female, age 85, both hemispheres 47.6
2245 Female, age 91, both hemispheres 47.6
1990 Female, age 91, right hemisphere 47.1
2622 Female, age 67, right hemisphere 46.1
2532 Female, age 72, left hemisphere 44.6
2693 Female, age 94, both hemispheres 43.0
2250 Female, age 67, right hemisphere 41.6
2692 Male, age 74, both hemispheres 40.9
2018 Male, age 76, both hemispheres 38.5
Perirhinal gyrus
nTPM: 46.4
1847 Female, age 91, left hemisphere 52.2
1794 Male, age 80, right hemisphere 51.1
1841 Female, age 85, right hemisphere 44.9
2521 Female, age 94, right hemisphere 42.6
2848 Male, age 76, right hemisphere 40.9
Subiculum
nTPM: 40.6
1901 Male, age 80, both hemispheres 49.6
1977 Female, age 85, both hemispheres 46.1
2042 Male, age 76, both hemispheres 41.1
2619 Male, age 74, both hemispheres 38.9
2729 Female, age 91, right hemisphere 38.8
2438 Female, age 94, left hemisphere 29.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 15.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 15.0
Samples: 197

Max nTPM: 24.7
Min nTPM: 8.9
Std nTPM: 3.3
Median nTPM: 14.7
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 24.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 24.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 23.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 22.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 22.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 22.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 22.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 21.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 21.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 21.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 20.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 14.0
FF:10153-102I9 76 years, female 20.8
FF:10169-103B7 60 years, female 7.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 10.5
Pig sample Sample description nTPM
Subiculum
nTPM: 9.2
Samples: 4

Max nTPM: 9.6
Min nTPM: 8.3
Sample A Female 9.5
Sample B Female 9.5
Sample C Male 9.6
Sample D Male 8.3
Dorsal hippocampus
nTPM: 9.1
Samples: 4

Max nTPM: 9.9
Min nTPM: 8.2
Sample A Female 8.7
Sample B Female 9.9
Sample C Male 8.2
Sample D Male 9.6
Entorhinal cortex
nTPM: 10.6
Samples: 4

Max nTPM: 11.3
Min nTPM: 9.5
Sample A Female 11.3
Sample B Female 9.5
Sample C Male 10.1
Sample D Male 11.3
Ventral hippocampus
nTPM: 9.8
Samples: 4

Max nTPM: 10.4
Min nTPM: 8.8
Sample A Female 8.8
Sample B Female 9.6
Sample C Male 10.4
Sample D Male 10.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 10.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 10.5
Samples: 4

Max nTPM: 12.3
Min nTPM: 7.3
Sample A Male 10.6
Sample B Male 12.3
Sample C Female 7.3
Sample D Female 11.9
Hippocampal formation
nTPM: 9.0
Samples: 4

Max nTPM: 10.4
Min nTPM: 7.4
Sample A Male 9.5
Sample B Male 10.4
Sample C Female 7.4
Sample D Female 8.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.5
67787345 Antisense, RP_040916_02_H10, Mouse strain C57BL/6J (56 days, male) 13.5
74047914 Antisense, RP_051214_02_C11, Mouse strain C57BL/6J (56 days, male) 3.5

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