MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.1 nTPM
HPA Brain:67.0 nTPM
GTEx:16.1 nTPM
FANTOM5:74.9 Scaled Tags Per Million
Pig:33.4 nTPM
Mouse:22.3 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 67.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.9
2411 Female, age 72, unknown 75.4
2219 Male, age 76, both hemispheres 72.8
1830 Male, age 51, unknown 70.1
1833 Male, age 53, unknown 70.0
1870 Female, age 42, unknown 66.7
1827 Male, age 72, unknown 63.7
2019 Male, age 18, unknown 62.2
2666 Male, age 74, left hemisphere 62.0
2828 Female, age 72, unknown 55.9
2586 Male, age 75, left hemisphere 50.2
Dorsal raphe nucleus
nTPM: 62.2
2016 Female, age 72, unknown 73.0
2750 Male, age 76, both hemispheres 63.2
2047 Male, age 72, unknown 60.2
1828 Male, age 53, unknown 58.8
2298 Female, age 72, unknown 55.9
Inferior colliculus
nTPM: 67.0
1848 Female, age 42, unknown 70.2
1890 Male, age 53, unknown 68.6
2849 Male, age 72, unknown 67.4
2097 Female, age 72, unknown 61.8
Median raphe nucleus
nTPM: 54.1
2220 Male, age 76, midline 54.1
Periaquaductal grey, anterior
nTPM: 61.2
2502 Female, age 75, unknown 66.9
1947 Male, age 18, unknown 66.0
1795 Male, age 51, unknown 50.6
Periaquaductal grey, dorsal
nTPM: 64.1
1840 Male, age 53, unknown 67.6
2464 Female, age 72, unknown 64.4
2850 Male, age 76, both hemispheres 62.5
1831 Male, age 72, unknown 61.7
Periaquaductal grey, lateral
nTPM: 63.2
2053 Male, age 18, unknown 66.9
2272 Male, age 74, both hemispheres 64.0
2140 Male, age 76, both hemispheres 58.7
Pretectal area
nTPM: 58.2
2316 Male, age 76, right hemisphere 69.9
2273 Male, age 74, both hemispheres 63.2
2407 Male, age 75, both hemispheres 62.8
2825 Male, age 18, unknown 61.1
2224 Female, age 72, unknown 59.0
1815 Male, age 53, unknown 57.3
2007 Male, age 72, unknown 56.7
1944 Female, age 72, unknown 55.6
1816 Male, age 51, unknown 54.8
1817 Female, age 42, unknown 53.3
2667 Female, age 75, unknown 46.8
Red nucleus
nTPM: 66.4
1865 Male, age 51, unknown 70.9
1904 Male, age 53, unknown 70.6
2503 Female, age 72, unknown 69.8
1954 Female, age 42, unknown 67.2
2725 Female, age 75, unknown 67.2
2823 Male, age 76, right hemisphere 66.6
2588 Male, age 74, left hemisphere 65.7
2769 Male, age 72, unknown 64.6
1821 Female, age 72, unknown 64.3
2227 Male, age 72, unknown 63.9
2785 Male, age 18, unknown 63.1
2584 Male, age 75, left hemisphere 62.8
Substantia nigra
nTPM: 56.9
2409 Female, age 72, unknown 68.8
2583 Male, age 75, right hemisphere 62.3
2590 Female, age 75, unknown 62.1
2241 Male, age 72, unknown 59.5
1851 Male, age 51, unknown 57.4
1889 Female, age 72, unknown 56.9
2665 Male, age 74, both hemispheres 52.6
2699 Male, age 18, unknown 52.2
1941 Male, age 53, unknown 49.5
1916 Female, age 42, unknown 47.7
Superior colliculus
nTPM: 60.6
1913 Female, age 42, unknown 70.9
1995 Male, age 72, unknown 66.9
1839 Male, age 51, unknown 64.6
2587 Male, age 74, left hemisphere 62.4
1895 Male, age 76, right hemisphere 61.5
2668 Female, age 75, unknown 60.8
2261 Male, age 18, unknown 58.5
2087 Female, age 72, unknown 57.4
1796 Male, age 53, unknown 57.2
2664 Male, age 75, both hemispheres 45.7
Ventral tegmental area
nTPM: 60.5
2410 Female, age 72, unknown 66.1
2223 Female, age 72, unknown 65.1
2021 Male, age 53, unknown 61.9
1942 Male, age 51, unknown 60.4
1915 Female, age 42, unknown 58.0
2218 Male, age 76, both hemispheres 51.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.1
Samples: 139

Max nTPM: 28.1
Min nTPM: 9.3
Std nTPM: 3.6
Median nTPM: 15.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 28.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 28.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 25.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 24.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 24.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 23.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 23.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 22.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 22.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 22.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 22.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 74.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 74.9
FF:10158-103A5 76 years, female 74.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.4
Samples: 4

Max nTPM: 32.1
Min nTPM: 28.1
Sample A Female 31.9
Sample B Female 32.1
Sample C Male 28.1
Sample D Male 29.3
Midbrain
nTPM: 33.4
Samples: 4

Max nTPM: 39.6
Min nTPM: 30.7
Sample A Female 39.6
Sample B Female 32.5
Sample C Male 30.7
Sample D Male 30.7
Periaqueductal gray
nTPM: 31.4
Samples: 3

Max nTPM: 32.6
Min nTPM: 30.6
Sample B Female 30.6
Sample C Male 32.6
Sample D Male 31.1
Superior colliculi
nTPM: 31.3
Samples: 4

Max nTPM: 32.7
Min nTPM: 29.7
Sample A Female 31.9
Sample B Female 29.7
Sample C Male 32.7
Sample D Male 30.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 23.6
Min nTPM: 20.5
Sample A Male 23.5
Sample B Male 20.5
Sample C Female 23.6
Sample D Female 21.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71496312 Antisense, RP_050913_04_C07, Mouse strain C57BL/6J (56 days, male) 0.2

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