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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
59.4
nTPM
FANTOM5:
100.7
Scaled Tags Per Million
Pig:
178.4
nTPM
PONS - HPA Brain RNA-seq
Max nTPM
59.4
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 52.9
1984
Male, age 76, both hemispheres
55.6
2301
Female, age 85, both hemispheres
54.3
2188
Female, age 91, both hemispheres
52.9
2090
Male, age 80, both hemispheres
48.6
Dorsal cochlear nucleus nTPM: 46.0
2187
Female, age 91, both hemispheres
49.4
2378
Male, age 80, both hemispheres
46.5
2370
Male, age 61, both hemispheres
46.2
2058
Male, age 76, both hemispheres
45.1
2802
Male, age 74, right hemisphere
42.8
Dorsal tegmental nucleus nTPM: 51.7
2358
Male, age 61, both hemispheres
62.2
2083
Male, age 80, both hemispheres
53.5
2326
Male, age 74, both hemispheres
46.7
1936
Male, age 76, left hemisphere
44.1
Dorsolateral tegmental area nTPM: 49.6
2141
Male, age 76, both hemispheres
56.6
2654
Male, age 80, both hemispheres
50.8
2751
Female, age 85, both hemispheres
50.7
2337
Male, age 61, both hemispheres
49.5
2360
Male, age 74, both hemispheres
40.3
Kolliker-Fuse nucleus nTPM: 50.7
2793
Female, age 91, left hemisphere
60.9
2163
Male, age 80, both hemispheres
51.0
2315
Male, age 76, right hemisphere
40.3
Lateral lemniscal nuclei nTPM: 49.5
2320
Female, age 91, left hemisphere
55.0
2453
Male, age 74, right hemisphere
52.5
2746
Female, age 85, left hemisphere
48.5
2169
Male, age 76, both hemispheres
47.5
2036
Male, age 80, both hemispheres
44.0
Lateral parabrachial nucleus nTPM: 49.7
2792
Male, age 76, both hemispheres
57.8
2139
Female, age 85, right hemisphere
50.0
2013
Male, age 80, both hemispheres
46.4
2790
Male, age 61, both hemispheres
44.6
Lateral vestibular nucleus nTPM: 48.2
2311
Male, age 80, both hemispheres
51.8
2184
Male, age 76, both hemispheres
44.5
Locus coeruleus nTPM: 52.3
2720
Male, age 74, both hemispheres
61.9
2788
Male, age 74, unknown
56.0
2162
Male, age 80, both hemispheres
54.2
2014
Male, age 55, unknown
52.6
2317
Female, age 72, unknown
50.6
2123
Female, age 91, both hemispheres
46.0
1980
Male, age 76, both hemispheres
44.8
Medial parabrachial nucleus nTPM: 51.6
2854
Male, age 80, both hemispheres
55.4
2786
Male, age 76, both hemispheres
53.6
2463
Female, age 85, right hemisphere
51.7
2156
Male, age 61, both hemispheres
50.2
2170
Female, age 91, both hemispheres
47.2
Medial periolivary nuclei nTPM: 49.0
2171
Female, age 85, both hemispheres
56.3
2458
Female, age 91, both hemispheres
53.1
2063
Male, age 76, both hemispheres
46.6
2081
Male, age 80, both hemispheres
46.1
2791
Male, age 74, right hemisphere
43.0
Motor facial nucleus nTPM: 52.4
2697
Female, age 85, both hemispheres
65.2
2327
Male, age 80, both hemispheres
57.3
2795
Female, age 91, both hemispheres
52.1
2365
Male, age 74, right hemisphere
49.4
2062
Male, age 76, both hemispheres
48.8
2126
Male, age 61, both hemispheres
41.9
Motor trigeminal nucleus nTPM: 51.9
2309
Male, age 76, both hemispheres
59.5
2321
Female, age 91, both hemispheres
54.9
2335
Male, age 61, both hemispheres
50.7
2079
Male, age 80, both hemispheres
48.8
2560
Male, age 74, both hemispheres
45.6
Nuclei of the trapezoid body nTPM: 50.7
2735
Female, age 85, both hemispheres
54.4
2159
Male, age 61, both hemispheres
52.4
2368
Female, age 91, both hemispheres
51.5
2166
Male, age 80, both hemispheres
48.4
1983
Male, age 76, both hemispheres
46.9
Nucleus raphe magnus nTPM: 55.2
2172
Female, age 85, both hemispheres
62.7
2051
Male, age 76, both hemispheres
56.9
2328
Male, age 80, both hemispheres
55.7
2459
Female, age 91, both hemispheres
53.3
2160
Male, age 61, both hemispheres
51.8
2455
Male, age 74, both hemispheres
50.6
Paramedian reticular nucleus nTPM: 52.2
2052
Male, age 76, both hemispheres
63.2
2050
Female, age 85, both hemispheres
50.6
2313
Male, age 61, both hemispheres
50.1
2057
Male, age 80, both hemispheres
44.8
Pedunculopontine tegmental nucleus nTPM: 54.1
1921
Female, age 85, both hemispheres
54.9
2338
Male, age 61, both hemispheres
54.4
2334
Male, age 80, both hemispheres
52.9
Pontine nuclei nTPM: 52.8
2787
Female, age 85, both hemispheres
65.8
1863
Male, age 55, unknown
58.0
1968
Male, age 76, left hemisphere
54.2
2319
Female, age 91, both hemispheres
52.8
2454
Male, age 74, left hemisphere
51.1
2727
Male, age 61, right hemisphere
47.0
2109
Female, age 72, unknown
46.9
2115
Male, age 80, left hemisphere
46.2
Pontine raphe nucleus nTPM: 59.4
2853
Male, age 76, midline
62.1
2122
Female, age 85, midline
56.8
Posteroventral cochlear nucleus nTPM: 50.4
2135
Female, age 91, both hemispheres
53.4
2341
Male, age 80, both hemispheres
52.2
2070
Male, age 76, both hemispheres
50.6
2752
Female, age 85, both hemispheres
49.4
2371
Male, age 61, both hemispheres
46.7
Principal sensory trigeminal nucleus nTPM: 47.9
2367
Female, age 91, left hemisphere
55.2
2158
Male, age 61, both hemispheres
48.5
2324
Male, age 76, both hemispheres
48.3
2008
Male, age 80, left hemisphere
39.4
Reticular pontine nucleus, caudal nTPM: 50.2
2332
Male, age 80, right hemisphere
53.1
2457
Female, age 91, both hemispheres
50.7
2559
Male, age 74, both hemispheres
48.8
2092
Male, age 76, both hemispheres
48.0
Reticular pontine nucleus, oral nTPM: 59.2
2361
Male, age 74, both hemispheres
76.7
2366
Female, age 91, both hemispheres
61.6
2167
Male, age 76, both hemispheres
59.8
1939
Male, age 80, both hemispheres
50.2
2012
Female, age 85, both hemispheres
47.9
Reticulotegmental nucleus nTPM: 52.5
2325
Male, age 76, both hemispheres
54.8
2322
Female, age 91, both hemispheres
52.9
2333
Male, age 80, both hemispheres
51.3
2452
Male, age 74, both hemispheres
51.2
Spinal trigeminal nucleus, oral nTPM: 52.9
1978
Male, age 76, both hemispheres
57.4
2737
Female, age 85, both hemispheres
53.9
2164
Male, age 80, both hemispheres
47.4
Subcoeruleus area nTPM: 51.2
2323
Female, age 91, left hemisphere
55.9
2451
Male, age 74, both hemispheres
54.4
1958
Male, age 80, both hemispheres
50.9
2369
Female, age 85, left hemisphere
50.2
2089
Male, age 76, left hemisphere
44.7
Superior olive nTPM: 53.0
1875
Female, age 85, both hemispheres
54.8
2329
Male, age 80, right hemisphere
54.8
2561
Female, age 91, both hemispheres
54.7
2020
Male, age 76, both hemispheres
52.2
2364
Male, age 74, right hemisphere
48.3
Ventral periolivary nuclei nTPM: 53.5
2130
Female, age 85, both hemispheres
55.4
2794
Female, age 91, left hemisphere
54.5
2023
Male, age 76, both hemispheres
53.9
2165
Male, age 80, both hemispheres
50.3
Ventrolateral tegmental area, A5 NE cell group nTPM: 49.7
2840
Female, age 85, both hemispheres
54.5
2359
Male, age 61, both hemispheres
51.2
2456
Female, age 91, both hemispheres
50.8
2449
Male, age 74, both hemispheres
48.9
2161
Male, age 80, both hemispheres
47.9
1959
Male, age 76, both hemispheres
44.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
