MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:162.6 nTPM
HPA Brain:66.4 nTPM
GTEx:162.6 nTPM
FANTOM5:94.4 Scaled Tags Per Million
Pig:34.3 nTPM
Mouse:15.8 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 66.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.9
2411 Female, age 72, unknown 73.4
1870 Female, age 42, unknown 69.4
2019 Male, age 18, unknown 63.6
1827 Male, age 72, unknown 59.5
1833 Male, age 53, unknown 59.3
2586 Male, age 75, left hemisphere 56.3
1830 Male, age 51, unknown 53.5
2828 Female, age 72, unknown 50.0
2666 Male, age 74, left hemisphere 49.0
2219 Male, age 76, both hemispheres 45.1
Dorsal raphe nucleus
nTPM: 63.0
1828 Male, age 53, unknown 68.9
2750 Male, age 76, both hemispheres 66.5
2298 Female, age 72, unknown 63.4
2047 Male, age 72, unknown 58.7
2016 Female, age 72, unknown 57.9
Inferior colliculus
nTPM: 55.5
1890 Male, age 53, unknown 58.4
2097 Female, age 72, unknown 56.7
1848 Female, age 42, unknown 53.5
2849 Male, age 72, unknown 53.4
Median raphe nucleus
nTPM: 60.0
2220 Male, age 76, midline 60.0
Periaquaductal grey, anterior
nTPM: 49.3
1947 Male, age 18, unknown 53.2
1795 Male, age 51, unknown 49.7
2502 Female, age 75, unknown 45.0
Periaquaductal grey, dorsal
nTPM: 52.7
1840 Male, age 53, unknown 56.6
2850 Male, age 76, both hemispheres 52.1
2464 Female, age 72, unknown 51.7
1831 Male, age 72, unknown 50.5
Periaquaductal grey, lateral
nTPM: 47.3
2053 Male, age 18, unknown 51.7
2140 Male, age 76, both hemispheres 47.4
2272 Male, age 74, both hemispheres 42.6
Pretectal area
nTPM: 55.6
1817 Female, age 42, unknown 67.2
2007 Male, age 72, unknown 64.7
1815 Male, age 53, unknown 61.0
1816 Male, age 51, unknown 59.2
2667 Female, age 75, unknown 57.6
2825 Male, age 18, unknown 55.3
1944 Female, age 72, unknown 54.1
2224 Female, age 72, unknown 51.3
2273 Male, age 74, both hemispheres 50.1
2316 Male, age 76, right hemisphere 45.9
2407 Male, age 75, both hemispheres 45.6
Red nucleus
nTPM: 63.0
1821 Female, age 72, unknown 89.1
1865 Male, age 51, unknown 66.0
1954 Female, age 42, unknown 65.9
2503 Female, age 72, unknown 64.3
2725 Female, age 75, unknown 64.2
2588 Male, age 74, left hemisphere 61.8
1904 Male, age 53, unknown 61.5
2227 Male, age 72, unknown 60.9
2823 Male, age 76, right hemisphere 59.4
2769 Male, age 72, unknown 57.1
2785 Male, age 18, unknown 54.6
2584 Male, age 75, left hemisphere 50.8
Substantia nigra
nTPM: 66.4
1916 Female, age 42, unknown 80.5
1851 Male, age 51, unknown 75.0
2241 Male, age 72, unknown 75.0
2409 Female, age 72, unknown 73.1
1889 Female, age 72, unknown 66.0
2665 Male, age 74, both hemispheres 65.4
2699 Male, age 18, unknown 60.4
1941 Male, age 53, unknown 60.2
2590 Female, age 75, unknown 56.6
2583 Male, age 75, right hemisphere 52.3
Superior colliculus
nTPM: 56.9
2668 Female, age 75, unknown 67.1
1895 Male, age 76, right hemisphere 65.5
2587 Male, age 74, left hemisphere 63.0
1913 Female, age 42, unknown 58.0
1839 Male, age 51, unknown 54.1
2087 Female, age 72, unknown 54.0
2261 Male, age 18, unknown 53.5
1995 Male, age 72, unknown 53.2
1796 Male, age 53, unknown 51.9
2664 Male, age 75, both hemispheres 48.9
Ventral tegmental area
nTPM: 59.8
1915 Female, age 42, unknown 68.0
2410 Female, age 72, unknown 68.0
2223 Female, age 72, unknown 64.0
2218 Male, age 76, both hemispheres 57.0
1942 Male, age 51, unknown 51.0
2021 Male, age 53, unknown 50.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 162.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 162.6
Samples: 139

Max nTPM: 364.6
Min nTPM: 97.1
Std nTPM: 39.7
Median nTPM: 153.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 364.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 309.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 298.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 261.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 244.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 239.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 236.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 235.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 235.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 232.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 227.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.4
FF:10158-103A5 76 years, female 94.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.1
Samples: 4

Max nTPM: 39.4
Min nTPM: 21.9
Sample A Female 39.4
Sample B Female 21.9
Sample C Male 32.3
Sample D Male 22.7
Midbrain
nTPM: 31.2
Samples: 4

Max nTPM: 35.7
Min nTPM: 24.6
Sample A Female 31.9
Sample B Female 24.6
Sample C Male 35.7
Sample D Male 32.6
Periaqueductal gray
nTPM: 26.1
Samples: 3

Max nTPM: 28.1
Min nTPM: 24.4
Sample B Female 25.9
Sample C Male 28.1
Sample D Male 24.4
Superior colliculi
nTPM: 34.3
Samples: 4

Max nTPM: 43.4
Min nTPM: 21.6
Sample A Female 43.4
Sample B Female 21.6
Sample C Male 41.6
Sample D Male 30.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.8
Samples: 4

Max nTPM: 16.2
Min nTPM: 15.1
Sample A Male 15.1
Sample B Male 15.6
Sample C Female 16.2
Sample D Female 16.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
68410452 Antisense, RP_041214_01_H10, Mouse strain C57BL/6J (56 days, male) 3.5

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