HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:17.7 nTPM
HPA Brain:65.9 nTPM
GTEx:17.7 nTPM
FANTOM5:28.2 Scaled Tags Per Million
Pig:61.2 nTPM
Mouse:30.5 nTPM
Allen mouse:1.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042343
Glial cells Not detected
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 65.9
Sample id Sample description nTPM
Hippocampus
nTPM: 51.9
2529 Female, age 94, left hemisphere 56.2
1898 Male, age 80, left hemisphere 54.8
1855 Male, age 76, left hemisphere 54.1
1911 Female, age 85, right hemisphere 49.6
2148 Female, age 91, left hemisphere 48.4
2621 Female, age 67, right hemisphere 48.1
Dentate gyrus
nTPM: 51.5
2528 Male, age 74, both hemispheres 55.3
1927 Female, age 91, both hemispheres 53.7
2246 Female, age 85, both hemispheres 53.1
2010 Male, age 76, both hemispheres 51.6
2530 Female, age 94, left hemisphere 47.7
2531 Female, age 67, both hemispheres 47.5
Entorhinal gyrus
nTPM: 57.8
1787 Male, age 76, left hemisphere 66.1
1938 Female, age 85, left hemisphere 63.8
2613 Female, age 94, left hemisphere 62.1
2686 Male, age 75, right hemisphere 53.9
2764 Male, age 80, right hemisphere 53.8
2117 Female, age 91, right hemisphere 47.0
Hippocampus, CA1
nTPM: 56.8
2749 Male, age 80, left hemisphere 66.4
2527 Male, age 74, both hemispheres 57.8
1873 Female, age 85, both hemispheres 57.3
2045 Male, age 76, both hemispheres 53.8
2082 Female, age 91, right hemisphere 48.6
Hippocampus, CA2
nTPM: 52.8
1892 Male, age 76, both hemispheres 61.7
1963 Male, age 80, left hemisphere 55.6
1940 Female, age 85, left hemisphere 54.5
2113 Female, age 91, right hemisphere 50.0
2437 Female, age 94, left hemisphere 49.2
2249 Male, age 74, both hemispheres 45.6
Hippocampus, CA3
nTPM: 51.4
2137 Male, age 80, left hemisphere 58.5
1891 Female, age 85, both hemispheres 52.4
1867 Male, age 76, both hemispheres 51.9
2861 Female, age 67, both hemispheres 50.1
2620 Female, age 94, left hemisphere 49.5
2436 Male, age 74, both hemispheres 45.8
Parahippocampal cortex
nTPM: 59.4
1850 Male, age 80, both hemispheres 71.2
1933 Female, age 85, both hemispheres 66.9
2693 Female, age 94, both hemispheres 60.6
1990 Female, age 91, right hemisphere 60.4
2692 Male, age 74, both hemispheres 60.3
2250 Female, age 67, right hemisphere 60.0
2018 Male, age 76, both hemispheres 57.3
2622 Female, age 67, right hemisphere 56.0
2245 Female, age 91, both hemispheres 53.0
2532 Female, age 72, left hemisphere 48.6
Perirhinal gyrus
nTPM: 65.9
2848 Male, age 76, right hemisphere 70.8
1847 Female, age 91, left hemisphere 70.5
1794 Male, age 80, right hemisphere 64.7
1841 Female, age 85, right hemisphere 63.4
2521 Female, age 94, right hemisphere 60.2
Subiculum
nTPM: 51.8
1977 Female, age 85, both hemispheres 58.1
2619 Male, age 74, both hemispheres 56.3
2438 Female, age 94, left hemisphere 52.7
2729 Female, age 91, right hemisphere 49.7
1901 Male, age 80, both hemispheres 48.7
2042 Male, age 76, both hemispheres 45.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 17.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 17.7
Samples: 197

Max nTPM: 29.5
Min nTPM: 8.6
Std nTPM: 3.9
Median nTPM: 17.8
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 29.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 27.7
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 27.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 26.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 26.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 25.1
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 24.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 24.7
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 24.5
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 24.3
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 24.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 28.2
FF:10153-102I9 76 years, female 35.6
FF:10169-103B7 60 years, female 20.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 61.2
Pig sample Sample description nTPM
Subiculum
nTPM: 61.2
Samples: 4

Max nTPM: 76.4
Min nTPM: 54.1
Sample A Female 76.4
Sample B Female 60.0
Sample C Male 54.1
Sample D Male 54.2
Dorsal hippocampus
nTPM: 52.7
Samples: 4

Max nTPM: 65.6
Min nTPM: 41.0
Sample A Female 65.6
Sample B Female 53.4
Sample C Male 50.6
Sample D Male 41.0
Entorhinal cortex
nTPM: 53.0
Samples: 4

Max nTPM: 58.9
Min nTPM: 46.9
Sample A Female 54.5
Sample B Female 51.7
Sample C Male 58.9
Sample D Male 46.9
Ventral hippocampus
nTPM: 47.9
Samples: 4

Max nTPM: 58.1
Min nTPM: 40.4
Sample A Female 47.7
Sample B Female 40.4
Sample C Male 45.2
Sample D Male 58.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 30.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 28.0
Samples: 4

Max nTPM: 31.9
Min nTPM: 26.0
Sample A Male 26.2
Sample B Male 26.0
Sample C Female 27.8
Sample D Female 31.9
Hippocampal formation
nTPM: 30.5
Samples: 4

Max nTPM: 37.2
Min nTPM: 26.4
Sample A Male 26.4
Sample B Male 31.8
Sample C Female 37.2
Sample D Female 26.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.5
71213831 Antisense, RP_050816_04_G08, Mouse strain C57BL/6J (56 days, male) 1.5

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