BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:243.2 nTPM
HPA Brain:119.9 nTPM
GTEx:243.2 nTPM
FANTOM5:101.5 Scaled Tags Per Million
Pig:47.1 nTPM
Mouse:143.8 nTPM
Allen mouse:1.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA059163
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 119.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 119.9
2481 Female, age 94, left hemisphere 145.3
1781 Male, age 74, unknown 126.4
2846 Female, age 79, unknown 122.6
1857 Female, age 85, left hemisphere 119.1
1854 Male, age 80, left hemisphere 118.1
2290 Female, age 72, unknown 115.4
2289 Male, age 61, right hemisphere 109.6
2288 Male, age 75, left hemisphere 102.3
Globus pallidus, externus
nTPM: 112.8
1996 Male, age 80, right hemisphere 147.9
2772 Female, age 79, unknown 138.0
2646 Male, age 61, right hemisphere 98.3
2395 Male, age 75, both hemispheres 91.5
2567 Female, age 72, unknown 88.3
Globus pallidus, internus
nTPM: 115.0
2483 Female, age 94, right hemisphere 151.1
2287 Male, age 75, right hemisphere 141.5
2778 Female, age 91, both hemispheres 124.0
1818 Male, age 74, unknown 115.1
2037 Male, age 80, right hemisphere 112.3
2566 Female, age 72, unknown 88.1
2111 Female, age 85, right hemisphere 73.2
Nucleus accumbens
nTPM: 119.3
1856 Female, age 91, right hemisphere 137.7
1783 Male, age 74, unknown 137.1
1806 Female, age 85, left hemisphere 129.9
2286 Male, age 75, left hemisphere 116.4
2824 Male, age 61, right hemisphere 113.3
2698 Female, age 72, unknown 111.7
2732 Male, age 80, right hemisphere 104.6
2391 Female, age 94, left hemisphere 103.9
Nucleus basalis of Meynert
nTPM: 109.6
2484 Female, age 94, left hemisphere 141.2
2569 Male, age 61, both hemispheres 99.8
2821 Male, age 75, both hemispheres 98.8
2393 Male, age 80, right hemisphere 98.5
Nucleus of the diagonal band
nTPM: 104.6
1979 Male, age 74, unknown 119.8
2775 Male, age 80, right hemisphere 114.1
1812 Female, age 91, both hemispheres 104.3
2195 Female, age 85, both hemispheres 95.5
2029 Male, age 61, right hemisphere 89.3
Putamen
nTPM: 113.1
2482 Female, age 94, left hemisphere 141.8
2466 Female, age 79, unknown 134.9
1838 Male, age 80, right hemisphere 122.0
1937 Female, age 91, right hemisphere 114.6
2647 Male, age 75, left hemisphere 107.3
2489 Female, age 72, unknown 98.3
1829 Male, age 74, unknown 72.6
Septal nuclei
nTPM: 98.4
1960 Male, age 74, unknown 119.0
2031 Female, age 72, unknown 105.5
2199 Male, age 80, right hemisphere 103.6
2059 Female, age 85, both hemispheres 99.6
2009 Female, age 91, both hemispheres 93.8
2394 Male, age 61, left hemisphere 85.9
2629 Female, age 94, right hemisphere 81.3
Stria terminalis, bed nucleus
nTPM: 98.8
1974 Female, age 91, both hemispheres 106.3
2201 Male, age 74, unknown 102.6
2486 Female, age 94, both hemispheres 87.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 243.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 213.6
Samples: 246

Max nTPM: 469.5
Min nTPM: 107.5
Std nTPM: 61.1
Median nTPM: 200.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 469.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 459.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 436.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 415.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 412.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 379.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 360.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 348.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 346.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 340.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 338.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 243.2
Samples: 246

Max nTPM: 778.3
Min nTPM: 100.8
Std nTPM: 76.9
Median nTPM: 232.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 778.3
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 567.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 552.3
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 472.8
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 461.7
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 457.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 438.6
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 399.8
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 391.4
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 384.2
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 366.9
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Brain - Putamen (basal ganglia)
Average nTPM: 239.7
Samples: 205

Max nTPM: 513.0
Min nTPM: 105.3
Std nTPM: 58.1
Median nTPM: 231.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 513.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 445.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 415.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 405.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 391.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 356.3
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 345.6
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 338.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 336.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 333.4
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 332.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 101.5
FF:10164-103B2 76 years, female 101.5
Nucleus accumbens
Scaled Tags Per Million: 82.8
FF:10037-101F1 23-56 years, mixed 82.8
Putamen
Scaled Tags Per Million: 99.5
FF:10176-103C5 60 years, female 99.5
Globus pallidus
Scaled Tags Per Million: 77.2
FF:10175-103C4 60 years, female 87.1
FF:10161-103A8 76 years, female 67.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 47.1
Pig sample Sample description nTPM
Caudate
nTPM: 46.0
Samples: 4

Max nTPM: 58.2
Min nTPM: 37.1
Sample A Female 43.2
Sample B Female 58.2
Sample C Male 45.4
Sample D Male 37.1
Putamen
nTPM: 41.6
Samples: 4

Max nTPM: 51.3
Min nTPM: 34.8
Sample A Female 38.4
Sample B Female 42.0
Sample C Male 51.3
Sample D Male 34.8
Septum
nTPM: 47.1
Samples: 4

Max nTPM: 58.8
Min nTPM: 31.1
Sample A Female 58.8
Sample B Female 55.7
Sample C Male 31.1
Sample D Male 42.7
Ventral pallidum
nTPM: 43.5
Samples: 4

Max nTPM: 64.0
Min nTPM: 27.5
Sample A Female 49.0
Sample B Female 64.0
Sample C Male 33.4
Sample D Male 27.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 143.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 80.8
Samples: 4

Max nTPM: 131.3
Min nTPM: 48.5
Sample A Male 80.8
Sample B Male 131.3
Sample C Female 48.5
Sample D Female 62.7
Septum
nTPM: 143.8
Samples: 4

Max nTPM: 162.6
Min nTPM: 111.9
Sample A Male 139.6
Sample B Male 162.6
Sample C Female 160.9
Sample D Female 111.9
Ventral forebrain
nTPM: 108.9
Samples: 4

Max nTPM: 155.6
Min nTPM: 80.1
Sample A Male 117.0
Sample B Male 80.1
Sample C Female 155.6
Sample D Female 82.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.4
386251 Antisense, RP_040804_01_E02, Mouse strain C57BL/6J (56 days, male) 1.4
Pallidum
Expression energy: 1.6
386251 Antisense, RP_040804_01_E02, Mouse strain C57BL/6J (56 days, male) 1.6

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