MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.8 nTPM
HPA Brain:27.4 nTPM
GTEx:25.8 nTPM
FANTOM5:35.6 Scaled Tags Per Million
Pig:22.4 nTPM
Mouse:4.0 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.9
2019 Male, age 18, unknown 28.8
2411 Female, age 72, unknown 22.5
1870 Female, age 42, unknown 22.1
1827 Male, age 72, unknown 21.8
2219 Male, age 76, both hemispheres 20.4
1833 Male, age 53, unknown 20.2
2586 Male, age 75, left hemisphere 19.3
2666 Male, age 74, left hemisphere 18.9
1830 Male, age 51, unknown 18.3
2828 Female, age 72, unknown 16.6
Dorsal raphe nucleus
nTPM: 23.4
2298 Female, age 72, unknown 27.1
2047 Male, age 72, unknown 23.4
1828 Male, age 53, unknown 22.7
2750 Male, age 76, both hemispheres 22.4
2016 Female, age 72, unknown 21.2
Inferior colliculus
nTPM: 24.2
2097 Female, age 72, unknown 29.0
1890 Male, age 53, unknown 25.3
1848 Female, age 42, unknown 21.5
2849 Male, age 72, unknown 20.9
Median raphe nucleus
nTPM: 25.4
2220 Male, age 76, midline 25.4
Periaquaductal grey, anterior
nTPM: 20.5
2502 Female, age 75, unknown 22.9
1795 Male, age 51, unknown 20.0
1947 Male, age 18, unknown 18.6
Periaquaductal grey, dorsal
nTPM: 21.4
1840 Male, age 53, unknown 23.9
2850 Male, age 76, both hemispheres 21.9
2464 Female, age 72, unknown 20.1
1831 Male, age 72, unknown 19.6
Periaquaductal grey, lateral
nTPM: 19.2
2272 Male, age 74, both hemispheres 20.2
2140 Male, age 76, both hemispheres 19.1
2053 Male, age 18, unknown 18.4
Pretectal area
nTPM: 24.8
1817 Female, age 42, unknown 34.1
1816 Male, age 51, unknown 31.0
2007 Male, age 72, unknown 30.9
1944 Female, age 72, unknown 28.0
1815 Male, age 53, unknown 26.7
2667 Female, age 75, unknown 23.7
2224 Female, age 72, unknown 23.1
2273 Male, age 74, both hemispheres 21.8
2316 Male, age 76, right hemisphere 18.9
2825 Male, age 18, unknown 18.1
2407 Male, age 75, both hemispheres 16.6
Red nucleus
nTPM: 20.8
1821 Female, age 72, unknown 25.5
2785 Male, age 18, unknown 25.4
2725 Female, age 75, unknown 22.8
2503 Female, age 72, unknown 21.1
1954 Female, age 42, unknown 21.0
2588 Male, age 74, left hemisphere 20.9
1904 Male, age 53, unknown 19.8
2823 Male, age 76, right hemisphere 19.6
1865 Male, age 51, unknown 19.3
2769 Male, age 72, unknown 18.6
2227 Male, age 72, unknown 18.2
2584 Male, age 75, left hemisphere 16.9
Substantia nigra
nTPM: 27.4
2241 Male, age 72, unknown 37.6
1916 Female, age 42, unknown 34.9
2409 Female, age 72, unknown 30.9
1889 Female, age 72, unknown 30.7
1851 Male, age 51, unknown 28.7
1941 Male, age 53, unknown 26.1
2665 Male, age 74, both hemispheres 25.2
2699 Male, age 18, unknown 21.4
2590 Female, age 75, unknown 20.1
2583 Male, age 75, right hemisphere 18.7
Superior colliculus
nTPM: 21.0
2587 Male, age 74, left hemisphere 24.2
2261 Male, age 18, unknown 23.4
2087 Female, age 72, unknown 23.1
2668 Female, age 75, unknown 23.1
1895 Male, age 76, right hemisphere 22.9
1796 Male, age 53, unknown 20.5
1839 Male, age 51, unknown 20.0
1913 Female, age 42, unknown 18.8
2664 Male, age 75, both hemispheres 17.3
1995 Male, age 72, unknown 17.1
Ventral tegmental area
nTPM: 23.8
2410 Female, age 72, unknown 28.2
2218 Male, age 76, both hemispheres 26.0
1915 Female, age 42, unknown 25.3
1942 Male, age 51, unknown 22.1
2223 Female, age 72, unknown 20.8
2021 Male, age 53, unknown 20.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.8
Samples: 139

Max nTPM: 46.5
Min nTPM: 16.9
Std nTPM: 4.7
Median nTPM: 25.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 46.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 41.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 35.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 35.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 35.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 34.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 33.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 33.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 33.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 33.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 32.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.6
FF:10158-103A5 76 years, female 35.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.8
Samples: 4

Max nTPM: 23.8
Min nTPM: 18.7
Sample A Female 21.4
Sample B Female 18.7
Sample C Male 23.8
Sample D Male 19.3
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 24.7
Min nTPM: 19.7
Sample A Female 19.7
Sample B Female 21.3
Sample C Male 23.5
Sample D Male 24.7
Periaqueductal gray
nTPM: 19.9
Samples: 3

Max nTPM: 21.4
Min nTPM: 18.9
Sample B Female 18.9
Sample C Male 21.4
Sample D Male 19.3
Superior colliculi
nTPM: 22.4
Samples: 4

Max nTPM: 23.4
Min nTPM: 21.0
Sample A Female 23.4
Sample B Female 22.2
Sample C Male 22.9
Sample D Male 21.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.0
Samples: 4

Max nTPM: 5.5
Min nTPM: 2.5
Sample A Male 5.5
Sample B Male 4.2
Sample C Female 3.7
Sample D Female 2.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69817049 Antisense, RP_050510_02_E05, Mouse strain C57BL/6J (56 days, male) 0.4

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