BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:8.3 nTPM
HPA Brain:5.8 nTPM
GTEx:8.3 nTPM
FANTOM5:27.2 Scaled Tags Per Million
Pig:17.4 nTPM
Mouse:47.7 nTPM
Allen mouse:0.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA030112
Glial cells Medium
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.7
2481 Female, age 94, left hemisphere 7.8
2288 Male, age 75, left hemisphere 6.2
2846 Female, age 79, unknown 6.1
1857 Female, age 85, left hemisphere 5.9
2290 Female, age 72, unknown 5.2
1781 Male, age 74, unknown 5.1
1854 Male, age 80, left hemisphere 4.9
2289 Male, age 61, right hemisphere 4.6
Globus pallidus, externus
nTPM: 5.5
1996 Male, age 80, right hemisphere 6.3
2395 Male, age 75, both hemispheres 6.3
2772 Female, age 79, unknown 6.0
2567 Female, age 72, unknown 4.8
2646 Male, age 61, right hemisphere 4.1
Globus pallidus, internus
nTPM: 5.7
2287 Male, age 75, right hemisphere 6.8
2778 Female, age 91, both hemispheres 6.3
2037 Male, age 80, right hemisphere 5.8
2483 Female, age 94, right hemisphere 5.7
1818 Male, age 74, unknown 5.5
2111 Female, age 85, right hemisphere 5.3
2566 Female, age 72, unknown 4.8
Nucleus accumbens
nTPM: 5.7
2391 Female, age 94, left hemisphere 7.2
2698 Female, age 72, unknown 6.2
2286 Male, age 75, left hemisphere 6.0
1806 Female, age 85, left hemisphere 5.5
2824 Male, age 61, right hemisphere 5.3
1783 Male, age 74, unknown 5.2
1856 Female, age 91, right hemisphere 5.2
2732 Male, age 80, right hemisphere 4.8
Nucleus basalis of Meynert
nTPM: 5.0
2821 Male, age 75, both hemispheres 5.6
2393 Male, age 80, right hemisphere 5.3
2484 Female, age 94, left hemisphere 5.2
2569 Male, age 61, both hemispheres 3.8
Nucleus of the diagonal band
nTPM: 5.8
1812 Female, age 91, both hemispheres 6.5
2775 Male, age 80, right hemisphere 5.9
2195 Female, age 85, both hemispheres 5.8
1979 Male, age 74, unknown 5.3
2029 Male, age 61, right hemisphere 5.3
Putamen
nTPM: 5.1
2482 Female, age 94, left hemisphere 6.2
1829 Male, age 74, unknown 5.7
2466 Female, age 79, unknown 5.4
1937 Female, age 91, right hemisphere 5.3
1838 Male, age 80, right hemisphere 5.2
2647 Male, age 75, left hemisphere 4.8
2489 Female, age 72, unknown 3.2
Septal nuclei
nTPM: 5.4
2031 Female, age 72, unknown 6.2
2009 Female, age 91, both hemispheres 5.9
1960 Male, age 74, unknown 5.7
2629 Female, age 94, right hemisphere 5.6
2199 Male, age 80, right hemisphere 5.1
2059 Female, age 85, both hemispheres 4.9
2394 Male, age 61, left hemisphere 4.5
Stria terminalis, bed nucleus
nTPM: 5.5
1974 Female, age 91, both hemispheres 5.8
2201 Male, age 74, unknown 5.5
2486 Female, age 94, both hemispheres 5.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 8.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 8.2
Samples: 246

Max nTPM: 15.5
Min nTPM: 4.1
Std nTPM: 1.5
Median nTPM: 8.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 15.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 13.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 12.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 12.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 12.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 11.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 11.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 11.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 11.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 11.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 11.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 8.2
Samples: 246

Max nTPM: 13.1
Min nTPM: 3.9
Std nTPM: 1.4
Median nTPM: 8.1
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 13.1
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 12.6
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 11.8
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 11.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 11.6
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 11.4
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 11.2
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 11.2
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 11.2
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 11.2
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 10.9
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Brain - Putamen (basal ganglia)
Average nTPM: 8.3
Samples: 205

Max nTPM: 15.1
Min nTPM: 4.0
Std nTPM: 1.4
Median nTPM: 8.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 15.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 13.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 12.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 12.0
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 11.9
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 11.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 11.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 10.9
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 10.8
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 10.8
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 10.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 21.1
FF:10164-103B2 76 years, female 21.1
Nucleus accumbens
Scaled Tags Per Million: 20.3
FF:10037-101F1 23-56 years, mixed 20.3
Putamen
Scaled Tags Per Million: 22.8
FF:10176-103C5 60 years, female 22.8
Globus pallidus
Scaled Tags Per Million: 27.2
FF:10175-103C4 60 years, female 29.8
FF:10161-103A8 76 years, female 24.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 17.4
Pig sample Sample description nTPM
Caudate
nTPM: 11.2
Samples: 4

Max nTPM: 12.1
Min nTPM: 10.4
Sample A Female 11.1
Sample B Female 10.4
Sample C Male 12.1
Sample D Male 11.1
Putamen
nTPM: 17.4
Samples: 4

Max nTPM: 20.3
Min nTPM: 14.1
Sample A Female 20.3
Sample B Female 14.1
Sample C Male 19.5
Sample D Male 15.6
Septum
nTPM: 14.3
Samples: 4

Max nTPM: 15.7
Min nTPM: 12.2
Sample A Female 15.5
Sample B Female 12.2
Sample C Male 13.9
Sample D Male 15.7
Ventral pallidum
nTPM: 15.4
Samples: 4

Max nTPM: 17.7
Min nTPM: 12.1
Sample A Female 12.1
Sample B Female 16.0
Sample C Male 15.7
Sample D Male 17.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 47.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 42.7
Samples: 4

Max nTPM: 43.5
Min nTPM: 41.5
Sample A Male 42.6
Sample B Male 43.0
Sample C Female 43.5
Sample D Female 41.5
Septum
nTPM: 47.7
Samples: 4

Max nTPM: 51.4
Min nTPM: 44.4
Sample A Male 45.8
Sample B Male 51.4
Sample C Female 49.3
Sample D Female 44.4
Ventral forebrain
nTPM: 43.5
Samples: 4

Max nTPM: 45.8
Min nTPM: 41.6
Sample A Male 44.7
Sample B Male 41.6
Sample C Female 45.8
Sample D Female 41.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.9
69782688 Antisense, RP_050505_03_E07, Mouse strain C57BL/6J (56 days, male) 0.9
Pallidum
Expression energy: 0.7
69782688 Antisense, RP_050505_03_E07, Mouse strain C57BL/6J (56 days, male) 0.7

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