MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.9 nTPM
HPA Brain:42.7 nTPM
GTEx:48.9 nTPM
FANTOM5:135.1 Scaled Tags Per Million
Pig:74.0 nTPM
Mouse:86.6 nTPM
Allen mouse:5.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.1
1870 Female, age 42, unknown 45.1
1827 Male, age 72, unknown 41.6
2019 Male, age 18, unknown 40.0
1833 Male, age 53, unknown 37.7
2411 Female, age 72, unknown 37.7
2828 Female, age 72, unknown 37.6
2586 Male, age 75, left hemisphere 35.7
1830 Male, age 51, unknown 33.1
2666 Male, age 74, left hemisphere 32.8
2219 Male, age 76, both hemispheres 29.7
Dorsal raphe nucleus
nTPM: 35.9
2298 Female, age 72, unknown 41.5
2016 Female, age 72, unknown 38.0
1828 Male, age 53, unknown 36.1
2047 Male, age 72, unknown 34.6
2750 Male, age 76, both hemispheres 29.4
Inferior colliculus
nTPM: 41.6
1890 Male, age 53, unknown 43.9
2097 Female, age 72, unknown 43.3
1848 Female, age 42, unknown 42.5
2849 Male, age 72, unknown 36.6
Median raphe nucleus
nTPM: 38.5
2220 Male, age 76, midline 38.5
Periaquaductal grey, anterior
nTPM: 38.3
1947 Male, age 18, unknown 40.3
2502 Female, age 75, unknown 38.2
1795 Male, age 51, unknown 36.4
Periaquaductal grey, dorsal
nTPM: 38.8
1840 Male, age 53, unknown 45.3
1831 Male, age 72, unknown 38.4
2850 Male, age 76, both hemispheres 38.1
2464 Female, age 72, unknown 33.4
Periaquaductal grey, lateral
nTPM: 36.9
2140 Male, age 76, both hemispheres 40.0
2053 Male, age 18, unknown 37.1
2272 Male, age 74, both hemispheres 33.4
Pretectal area
nTPM: 41.3
2007 Male, age 72, unknown 45.4
1944 Female, age 72, unknown 43.8
2667 Female, age 75, unknown 43.8
1817 Female, age 42, unknown 43.4
2273 Male, age 74, both hemispheres 42.8
1816 Male, age 51, unknown 42.4
2316 Male, age 76, right hemisphere 40.7
1815 Male, age 53, unknown 39.8
2224 Female, age 72, unknown 39.2
2407 Male, age 75, both hemispheres 36.8
2825 Male, age 18, unknown 36.4
Red nucleus
nTPM: 40.0
1954 Female, age 42, unknown 45.1
1821 Female, age 72, unknown 44.8
1865 Male, age 51, unknown 44.7
1904 Male, age 53, unknown 43.2
2725 Female, age 75, unknown 43.2
2503 Female, age 72, unknown 42.3
2785 Male, age 18, unknown 40.9
2769 Male, age 72, unknown 39.4
2227 Male, age 72, unknown 38.5
2823 Male, age 76, right hemisphere 36.6
2588 Male, age 74, left hemisphere 32.4
2584 Male, age 75, left hemisphere 28.6
Substantia nigra
nTPM: 42.7
2409 Female, age 72, unknown 50.1
1916 Female, age 42, unknown 48.4
1851 Male, age 51, unknown 46.0
1889 Female, age 72, unknown 45.2
2583 Male, age 75, right hemisphere 44.0
2241 Male, age 72, unknown 43.3
2590 Female, age 75, unknown 39.2
2665 Male, age 74, both hemispheres 39.2
2699 Male, age 18, unknown 37.3
1941 Male, age 53, unknown 33.8
Superior colliculus
nTPM: 37.6
2087 Female, age 72, unknown 44.3
2587 Male, age 74, left hemisphere 40.6
2261 Male, age 18, unknown 40.5
1913 Female, age 42, unknown 37.9
1796 Male, age 53, unknown 37.7
1839 Male, age 51, unknown 35.8
1995 Male, age 72, unknown 35.8
1895 Male, age 76, right hemisphere 35.5
2668 Female, age 75, unknown 35.0
2664 Male, age 75, both hemispheres 33.0
Ventral tegmental area
nTPM: 37.7
1915 Female, age 42, unknown 44.4
2218 Male, age 76, both hemispheres 38.1
2410 Female, age 72, unknown 37.8
1942 Male, age 51, unknown 36.6
2223 Female, age 72, unknown 34.8
2021 Male, age 53, unknown 34.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.9
Samples: 139

Max nTPM: 106.8
Min nTPM: 20.2
Std nTPM: 12.7
Median nTPM: 47.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 106.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 88.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 81.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 80.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 80.0
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 74.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 71.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 70.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 69.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 69.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 68.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 135.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 135.1
FF:10158-103A5 76 years, female 135.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 74.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 65.4
Samples: 4

Max nTPM: 78.9
Min nTPM: 57.4
Sample A Female 78.9
Sample B Female 67.6
Sample C Male 57.4
Sample D Male 57.8
Midbrain
nTPM: 74.0
Samples: 4

Max nTPM: 101.6
Min nTPM: 61.9
Sample A Female 101.6
Sample B Female 70.1
Sample C Male 61.9
Sample D Male 62.4
Periaqueductal gray
nTPM: 62.0
Samples: 3

Max nTPM: 67.1
Min nTPM: 57.8
Sample B Female 67.1
Sample C Male 61.1
Sample D Male 57.8
Superior colliculi
nTPM: 68.4
Samples: 4

Max nTPM: 83.2
Min nTPM: 61.3
Sample A Female 83.2
Sample B Female 61.3
Sample C Male 67.6
Sample D Male 61.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 86.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 86.6
Samples: 4

Max nTPM: 89.6
Min nTPM: 85.2
Sample A Male 89.6
Sample B Male 86.3
Sample C Female 85.2
Sample D Female 85.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
69873648 Antisense, RP_050512_01_F09, Mouse strain C57BL/6J (56 days, male) 5.2

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