MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.5 nTPM
HPA Brain:19.7 nTPM
GTEx:11.5 nTPM
FANTOM5:27.1 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.2
2219 Male, age 76, both hemispheres 20.6
1870 Female, age 42, unknown 16.2
1833 Male, age 53, unknown 15.4
1827 Male, age 72, unknown 14.8
2411 Female, age 72, unknown 14.7
2666 Male, age 74, left hemisphere 13.7
2828 Female, age 72, unknown 13.7
1830 Male, age 51, unknown 12.6
2019 Male, age 18, unknown 11.6
2586 Male, age 75, left hemisphere 9.1
Dorsal raphe nucleus
nTPM: 14.9
2750 Male, age 76, both hemispheres 16.4
2047 Male, age 72, unknown 16.3
2298 Female, age 72, unknown 15.1
1828 Male, age 53, unknown 13.8
2016 Female, age 72, unknown 13.0
Inferior colliculus
nTPM: 14.4
2849 Male, age 72, unknown 15.8
2097 Female, age 72, unknown 15.0
1848 Female, age 42, unknown 14.6
1890 Male, age 53, unknown 12.2
Median raphe nucleus
nTPM: 19.7
2220 Male, age 76, midline 19.7
Periaquaductal grey, anterior
nTPM: 12.9
1947 Male, age 18, unknown 14.1
2502 Female, age 75, unknown 12.4
1795 Male, age 51, unknown 12.1
Periaquaductal grey, dorsal
nTPM: 14.2
2850 Male, age 76, both hemispheres 15.8
1840 Male, age 53, unknown 15.1
2464 Female, age 72, unknown 13.2
1831 Male, age 72, unknown 12.8
Periaquaductal grey, lateral
nTPM: 13.2
2140 Male, age 76, both hemispheres 14.5
2053 Male, age 18, unknown 13.7
2272 Male, age 74, both hemispheres 11.4
Pretectal area
nTPM: 13.4
2825 Male, age 18, unknown 17.5
2407 Male, age 75, both hemispheres 14.6
2316 Male, age 76, right hemisphere 14.4
2007 Male, age 72, unknown 14.0
2224 Female, age 72, unknown 13.8
1817 Female, age 42, unknown 13.3
1815 Male, age 53, unknown 13.2
1816 Male, age 51, unknown 13.2
2273 Male, age 74, both hemispheres 11.6
1944 Female, age 72, unknown 11.1
2667 Female, age 75, unknown 10.9
Red nucleus
nTPM: 12.5
2588 Male, age 74, left hemisphere 14.1
1904 Male, age 53, unknown 13.7
1821 Female, age 72, unknown 13.4
2725 Female, age 75, unknown 13.1
1865 Male, age 51, unknown 12.9
1954 Female, age 42, unknown 12.3
2503 Female, age 72, unknown 12.1
2584 Male, age 75, left hemisphere 11.9
2769 Male, age 72, unknown 11.8
2823 Male, age 76, right hemisphere 11.7
2227 Male, age 72, unknown 11.6
2785 Male, age 18, unknown 10.8
Substantia nigra
nTPM: 17.0
2409 Female, age 72, unknown 21.7
2241 Male, age 72, unknown 19.1
1916 Female, age 42, unknown 18.4
2699 Male, age 18, unknown 17.4
1851 Male, age 51, unknown 16.7
2665 Male, age 74, both hemispheres 16.5
2590 Female, age 75, unknown 16.4
2583 Male, age 75, right hemisphere 15.0
1941 Male, age 53, unknown 14.6
1889 Female, age 72, unknown 14.5
Superior colliculus
nTPM: 12.5
2668 Female, age 75, unknown 15.2
1839 Male, age 51, unknown 14.7
1796 Male, age 53, unknown 13.9
2587 Male, age 74, left hemisphere 13.7
1895 Male, age 76, right hemisphere 13.4
1913 Female, age 42, unknown 11.3
2087 Female, age 72, unknown 11.1
2261 Male, age 18, unknown 10.9
2664 Male, age 75, both hemispheres 10.2
1995 Male, age 72, unknown 10.1
Ventral tegmental area
nTPM: 16.1
1915 Female, age 42, unknown 18.1
2021 Male, age 53, unknown 16.1
2223 Female, age 72, unknown 16.1
1942 Male, age 51, unknown 15.7
2218 Male, age 76, both hemispheres 15.5
2410 Female, age 72, unknown 15.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.5
Samples: 139

Max nTPM: 17.2
Min nTPM: 6.7
Std nTPM: 2.4
Median nTPM: 11.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 17.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 17.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 17.1
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 17.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 16.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 16.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 16.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 16.1
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 15.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 15.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 15.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.1
FF:10158-103A5 76 years, female 27.1

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