MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.5 nTPM
HPA Brain:8.3 nTPM
GTEx:12.5 nTPM
FANTOM5:44.9 Scaled Tags Per Million
Pig:8.4 nTPM
Mouse:21.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4.7
2019 Male, age 18, unknown 6.0
2828 Female, age 72, unknown 6.0
1830 Male, age 51, unknown 5.3
1870 Female, age 42, unknown 5.0
1833 Male, age 53, unknown 4.7
2666 Male, age 74, left hemisphere 4.7
2411 Female, age 72, unknown 4.6
1827 Male, age 72, unknown 4.4
2219 Male, age 76, both hemispheres 4.0
2586 Male, age 75, left hemisphere 1.9
Dorsal raphe nucleus
nTPM: 7.1
2298 Female, age 72, unknown 9.6
2016 Female, age 72, unknown 8.6
2750 Male, age 76, both hemispheres 6.9
1828 Male, age 53, unknown 6.1
2047 Male, age 72, unknown 4.4
Inferior colliculus
nTPM: 5.3
2097 Female, age 72, unknown 6.4
1890 Male, age 53, unknown 5.5
1848 Female, age 42, unknown 4.7
2849 Male, age 72, unknown 4.4
Median raphe nucleus
nTPM: 6.2
2220 Male, age 76, midline 6.2
Periaquaductal grey, anterior
nTPM: 4.1
1795 Male, age 51, unknown 4.7
2502 Female, age 75, unknown 4.2
1947 Male, age 18, unknown 3.4
Periaquaductal grey, dorsal
nTPM: 6.9
1831 Male, age 72, unknown 9.6
2850 Male, age 76, both hemispheres 7.1
1840 Male, age 53, unknown 5.5
2464 Female, age 72, unknown 5.2
Periaquaductal grey, lateral
nTPM: 7.5
2272 Male, age 74, both hemispheres 10.0
2140 Male, age 76, both hemispheres 6.7
2053 Male, age 18, unknown 5.9
Pretectal area
nTPM: 6.2
2273 Male, age 74, both hemispheres 10.0
2316 Male, age 76, right hemisphere 9.4
2407 Male, age 75, both hemispheres 7.9
2224 Female, age 72, unknown 7.8
1815 Male, age 53, unknown 6.1
1817 Female, age 42, unknown 5.3
2007 Male, age 72, unknown 4.9
2667 Female, age 75, unknown 4.8
2825 Male, age 18, unknown 4.7
1944 Female, age 72, unknown 4.3
1816 Male, age 51, unknown 3.0
Red nucleus
nTPM: 5.7
1904 Male, age 53, unknown 7.9
2503 Female, age 72, unknown 7.7
1865 Male, age 51, unknown 7.6
2823 Male, age 76, right hemisphere 6.7
2725 Female, age 75, unknown 6.4
2769 Male, age 72, unknown 6.0
2227 Male, age 72, unknown 5.7
1821 Female, age 72, unknown 5.0
2785 Male, age 18, unknown 5.0
1954 Female, age 42, unknown 4.5
2584 Male, age 75, left hemisphere 4.3
2588 Male, age 74, left hemisphere 2.2
Substantia nigra
nTPM: 8.3
2699 Male, age 18, unknown 13.9
2665 Male, age 74, both hemispheres 10.8
2590 Female, age 75, unknown 10.2
2409 Female, age 72, unknown 8.4
1851 Male, age 51, unknown 8.2
1916 Female, age 42, unknown 7.3
2241 Male, age 72, unknown 7.3
1941 Male, age 53, unknown 6.3
2583 Male, age 75, right hemisphere 6.1
1889 Female, age 72, unknown 4.7
Superior colliculus
nTPM: 6.2
1913 Female, age 42, unknown 12.7
1995 Male, age 72, unknown 8.7
2587 Male, age 74, left hemisphere 8.5
1839 Male, age 51, unknown 6.2
1796 Male, age 53, unknown 5.1
2087 Female, age 72, unknown 4.9
2261 Male, age 18, unknown 4.9
2668 Female, age 75, unknown 4.6
1895 Male, age 76, right hemisphere 3.6
2664 Male, age 75, both hemispheres 3.3
Ventral tegmental area
nTPM: 7.6
2021 Male, age 53, unknown 9.3
2218 Male, age 76, both hemispheres 8.1
1915 Female, age 42, unknown 7.7
1942 Male, age 51, unknown 7.1
2410 Female, age 72, unknown 6.8
2223 Female, age 72, unknown 6.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.5
Samples: 139

Max nTPM: 64.7
Min nTPM: 0.9
Std nTPM: 10.6
Median nTPM: 9.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 64.7
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 47.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 46.5
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 45.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 38.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 38.3
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 35.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 32.5
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 32.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 31.6
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 29.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.9
FF:10158-103A5 76 years, female 44.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.5
Samples: 4

Max nTPM: 13.0
Min nTPM: 4.9
Sample A Female 4.9
Sample B Female 13.0
Sample C Male 6.9
Sample D Male 9.0
Midbrain
nTPM: 5.2
Samples: 4

Max nTPM: 7.6
Min nTPM: 3.2
Sample A Female 6.5
Sample B Female 7.6
Sample C Male 3.3
Sample D Male 3.2
Periaqueductal gray
nTPM: 7.4
Samples: 3

Max nTPM: 8.0
Min nTPM: 6.3
Sample B Female 7.9
Sample C Male 8.0
Sample D Male 6.3
Superior colliculi
nTPM: 5.7
Samples: 4

Max nTPM: 6.2
Min nTPM: 5.3
Sample A Female 5.7
Sample B Female 6.2
Sample C Male 5.3
Sample D Male 5.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.6
Samples: 4

Max nTPM: 24.1
Min nTPM: 20.0
Sample A Male 24.1
Sample B Male 21.5
Sample C Female 20.0
Sample D Female 20.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69736358 Antisense, RP_050503_04_F05, Mouse strain C57BL/6J (56 days, male) 0.0

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