MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:102.5 nTPM
HPA Brain:89.5 nTPM
GTEx:102.5 nTPM
FANTOM5:220.0 Scaled Tags Per Million
Pig:143.4 nTPM
Mouse:183.9 nTPM
Allen mouse:8.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 89.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.9
1827 Male, age 72, unknown 73.6
2019 Male, age 18, unknown 70.1
2411 Female, age 72, unknown 66.8
1870 Female, age 42, unknown 66.4
2828 Female, age 72, unknown 64.3
1833 Male, age 53, unknown 62.9
2219 Male, age 76, both hemispheres 61.4
1830 Male, age 51, unknown 54.6
2666 Male, age 74, left hemisphere 48.0
2586 Male, age 75, left hemisphere 30.6
Dorsal raphe nucleus
nTPM: 78.1
2298 Female, age 72, unknown 95.1
2750 Male, age 76, both hemispheres 79.8
1828 Male, age 53, unknown 79.2
2047 Male, age 72, unknown 75.6
2016 Female, age 72, unknown 61.1
Inferior colliculus
nTPM: 65.0
2097 Female, age 72, unknown 74.6
1848 Female, age 42, unknown 65.6
1890 Male, age 53, unknown 62.2
2849 Male, age 72, unknown 57.5
Median raphe nucleus
nTPM: 89.5
2220 Male, age 76, midline 89.5
Periaquaductal grey, anterior
nTPM: 63.8
1947 Male, age 18, unknown 76.5
1795 Male, age 51, unknown 65.3
2502 Female, age 75, unknown 49.5
Periaquaductal grey, dorsal
nTPM: 65.1
2850 Male, age 76, both hemispheres 85.3
1840 Male, age 53, unknown 60.7
1831 Male, age 72, unknown 57.3
2464 Female, age 72, unknown 57.2
Periaquaductal grey, lateral
nTPM: 77.2
2272 Male, age 74, both hemispheres 90.5
2140 Male, age 76, both hemispheres 85.0
2053 Male, age 18, unknown 56.1
Pretectal area
nTPM: 78.6
2667 Female, age 75, unknown 95.8
2273 Male, age 74, both hemispheres 90.1
1944 Female, age 72, unknown 87.1
1816 Male, age 51, unknown 85.0
1817 Female, age 42, unknown 82.9
2007 Male, age 72, unknown 81.9
2224 Female, age 72, unknown 81.0
1815 Male, age 53, unknown 73.8
2316 Male, age 76, right hemisphere 67.0
2825 Male, age 18, unknown 60.3
2407 Male, age 75, both hemispheres 59.8
Red nucleus
nTPM: 69.5
2725 Female, age 75, unknown 97.1
1821 Female, age 72, unknown 86.4
2503 Female, age 72, unknown 76.7
1954 Female, age 42, unknown 70.1
1904 Male, age 53, unknown 67.7
1865 Male, age 51, unknown 67.5
2823 Male, age 76, right hemisphere 67.4
2769 Male, age 72, unknown 66.9
2785 Male, age 18, unknown 66.8
2227 Male, age 72, unknown 65.8
2588 Male, age 74, left hemisphere 51.1
2584 Male, age 75, left hemisphere 50.9
Substantia nigra
nTPM: 80.7
1916 Female, age 42, unknown 115.1
1851 Male, age 51, unknown 90.3
1889 Female, age 72, unknown 89.9
1941 Male, age 53, unknown 88.6
2241 Male, age 72, unknown 88.4
2699 Male, age 18, unknown 81.7
2409 Female, age 72, unknown 74.1
2590 Female, age 75, unknown 70.4
2665 Male, age 74, both hemispheres 60.2
2583 Male, age 75, right hemisphere 48.3
Superior colliculus
nTPM: 62.0
2087 Female, age 72, unknown 77.2
1895 Male, age 76, right hemisphere 76.3
2587 Male, age 74, left hemisphere 76.0
2261 Male, age 18, unknown 70.5
1796 Male, age 53, unknown 69.4
1913 Female, age 42, unknown 58.9
1995 Male, age 72, unknown 55.3
1839 Male, age 51, unknown 55.2
2668 Female, age 75, unknown 48.7
2664 Male, age 75, both hemispheres 32.2
Ventral tegmental area
nTPM: 76.8
2218 Male, age 76, both hemispheres 89.2
2410 Female, age 72, unknown 88.2
1915 Female, age 42, unknown 84.4
1942 Male, age 51, unknown 68.9
2223 Female, age 72, unknown 67.9
2021 Male, age 53, unknown 62.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 102.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 102.5
Samples: 139

Max nTPM: 193.3
Min nTPM: 66.0
Std nTPM: 20.6
Median nTPM: 99.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 193.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 155.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 154.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 145.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 143.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 141.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 141.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 138.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 138.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 136.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 135.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 220.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 220.0
FF:10158-103A5 76 years, female 220.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 143.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 139.4
Samples: 4

Max nTPM: 164.1
Min nTPM: 113.6
Sample A Female 164.1
Sample B Female 113.6
Sample C Male 148.8
Sample D Male 131.0
Midbrain
nTPM: 141.8
Samples: 4

Max nTPM: 152.1
Min nTPM: 132.3
Sample A Female 150.4
Sample B Female 132.3
Sample C Male 152.1
Sample D Male 132.5
Periaqueductal gray
nTPM: 124.9
Samples: 3

Max nTPM: 133.7
Min nTPM: 113.8
Sample B Female 127.2
Sample C Male 133.7
Sample D Male 113.8
Superior colliculi
nTPM: 143.4
Samples: 4

Max nTPM: 159.6
Min nTPM: 120.9
Sample A Female 147.6
Sample B Female 120.9
Sample C Male 159.6
Sample D Male 145.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 183.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 183.9
Samples: 4

Max nTPM: 190.3
Min nTPM: 171.8
Sample A Male 171.8
Sample B Male 189.8
Sample C Female 190.3
Sample D Female 183.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.4
69735144 Antisense, RP_050503_02_B09, Mouse strain C57BL/6J (56 days, male) 8.4

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