MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:79.7 nTPM
HPA Brain:50.2 nTPM
GTEx:79.7 nTPM
FANTOM5:92.5 Scaled Tags Per Million
Pig:88.6 nTPM
Mouse:71.1 nTPM
Allen mouse:10.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.2
2019 Male, age 18, unknown 42.0
2219 Male, age 76, both hemispheres 41.0
2411 Female, age 72, unknown 40.5
2666 Male, age 74, left hemisphere 39.0
1827 Male, age 72, unknown 36.3
1870 Female, age 42, unknown 35.6
2828 Female, age 72, unknown 32.6
1833 Male, age 53, unknown 32.5
2586 Male, age 75, left hemisphere 32.2
1830 Male, age 51, unknown 30.7
Dorsal raphe nucleus
nTPM: 42.5
2298 Female, age 72, unknown 46.4
2047 Male, age 72, unknown 46.1
2750 Male, age 76, both hemispheres 45.6
1828 Male, age 53, unknown 45.5
2016 Female, age 72, unknown 28.6
Inferior colliculus
nTPM: 28.1
2849 Male, age 72, unknown 30.6
1848 Female, age 42, unknown 28.3
2097 Female, age 72, unknown 27.3
1890 Male, age 53, unknown 26.3
Median raphe nucleus
nTPM: 49.8
2220 Male, age 76, midline 49.8
Periaquaductal grey, anterior
nTPM: 33.7
2502 Female, age 75, unknown 38.3
1795 Male, age 51, unknown 31.8
1947 Male, age 18, unknown 31.0
Periaquaductal grey, dorsal
nTPM: 28.0
2850 Male, age 76, both hemispheres 29.9
2464 Female, age 72, unknown 29.0
1840 Male, age 53, unknown 28.0
1831 Male, age 72, unknown 25.3
Periaquaductal grey, lateral
nTPM: 25.0
2053 Male, age 18, unknown 26.3
2272 Male, age 74, both hemispheres 25.7
2140 Male, age 76, both hemispheres 23.0
Pretectal area
nTPM: 36.3
2007 Male, age 72, unknown 48.3
1944 Female, age 72, unknown 48.1
1817 Female, age 42, unknown 47.9
1816 Male, age 51, unknown 42.2
1815 Male, age 53, unknown 39.4
2667 Female, age 75, unknown 35.6
2224 Female, age 72, unknown 35.1
2825 Male, age 18, unknown 29.1
2407 Male, age 75, both hemispheres 28.9
2273 Male, age 74, both hemispheres 24.9
2316 Male, age 76, right hemisphere 19.5
Red nucleus
nTPM: 38.1
1821 Female, age 72, unknown 52.3
2725 Female, age 75, unknown 44.0
2588 Male, age 74, left hemisphere 40.5
1865 Male, age 51, unknown 39.5
1954 Female, age 42, unknown 39.2
2503 Female, age 72, unknown 37.6
2785 Male, age 18, unknown 37.3
2823 Male, age 76, right hemisphere 34.8
2584 Male, age 75, left hemisphere 33.9
2769 Male, age 72, unknown 33.1
1904 Male, age 53, unknown 32.6
2227 Male, age 72, unknown 32.4
Substantia nigra
nTPM: 50.2
1916 Female, age 42, unknown 78.7
1941 Male, age 53, unknown 60.6
1851 Male, age 51, unknown 57.7
2241 Male, age 72, unknown 55.4
2699 Male, age 18, unknown 54.3
2409 Female, age 72, unknown 46.1
1889 Female, age 72, unknown 46.0
2665 Male, age 74, both hemispheres 42.4
2590 Female, age 75, unknown 32.1
2583 Male, age 75, right hemisphere 28.2
Superior colliculus
nTPM: 30.3
2087 Female, age 72, unknown 35.1
1796 Male, age 53, unknown 34.1
2668 Female, age 75, unknown 33.4
1895 Male, age 76, right hemisphere 33.3
1839 Male, age 51, unknown 30.8
1913 Female, age 42, unknown 30.3
2587 Male, age 74, left hemisphere 28.7
2261 Male, age 18, unknown 28.6
2664 Male, age 75, both hemispheres 26.0
1995 Male, age 72, unknown 22.9
Ventral tegmental area
nTPM: 43.0
2218 Male, age 76, both hemispheres 54.5
1915 Female, age 42, unknown 51.0
2410 Female, age 72, unknown 47.9
2223 Female, age 72, unknown 38.0
1942 Male, age 51, unknown 33.7
2021 Male, age 53, unknown 33.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 79.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.7
Samples: 139

Max nTPM: 182.1
Min nTPM: 46.1
Std nTPM: 22.0
Median nTPM: 73.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 182.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 154.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 152.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 148.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 137.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 126.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 116.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 113.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 113.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 111.7
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 111.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 92.5
FF:10158-103A5 76 years, female 92.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 88.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 88.6
Samples: 4

Max nTPM: 107.8
Min nTPM: 68.9
Sample A Female 106.3
Sample B Female 68.9
Sample C Male 107.8
Sample D Male 71.2
Midbrain
nTPM: 79.3
Samples: 4

Max nTPM: 86.9
Min nTPM: 73.9
Sample A Female 76.4
Sample B Female 86.9
Sample C Male 73.9
Sample D Male 80.1
Periaqueductal gray
nTPM: 72.0
Samples: 3

Max nTPM: 78.7
Min nTPM: 65.0
Sample B Female 72.2
Sample C Male 78.7
Sample D Male 65.0
Superior colliculi
nTPM: 81.7
Samples: 4

Max nTPM: 102.5
Min nTPM: 50.1
Sample A Female 102.5
Sample B Female 50.1
Sample C Male 89.0
Sample D Male 85.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 71.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.1
Samples: 4

Max nTPM: 73.7
Min nTPM: 66.1
Sample A Male 66.1
Sample B Male 72.7
Sample C Female 71.7
Sample D Female 73.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.1
70429465 Antisense, RP_050614_01_G02, Mouse strain C57BL/6J (56 days, male) 10.1

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