MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:695.1 nTPM
HPA Brain:292.9 nTPM
GTEx:695.1 nTPM
FANTOM5:647.8 Scaled Tags Per Million
Pig:2.8 nTPM
Mouse:572.2 nTPM
Allen mouse:14.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 292.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 212.3
1870 Female, age 42, unknown 247.9
1827 Male, age 72, unknown 245.8
2019 Male, age 18, unknown 244.9
2219 Male, age 76, both hemispheres 234.2
2828 Female, age 72, unknown 230.1
2411 Female, age 72, unknown 227.0
1833 Male, age 53, unknown 221.5
1830 Male, age 51, unknown 210.9
2666 Male, age 74, left hemisphere 141.1
2586 Male, age 75, left hemisphere 119.5
Dorsal raphe nucleus
nTPM: 263.8
2298 Female, age 72, unknown 311.4
2047 Male, age 72, unknown 266.5
2750 Male, age 76, both hemispheres 266.3
1828 Male, age 53, unknown 259.5
2016 Female, age 72, unknown 215.1
Inferior colliculus
nTPM: 236.0
2097 Female, age 72, unknown 245.3
2849 Male, age 72, unknown 245.3
1890 Male, age 53, unknown 227.8
1848 Female, age 42, unknown 225.8
Median raphe nucleus
nTPM: 292.9
2220 Male, age 76, midline 292.9
Periaquaductal grey, anterior
nTPM: 229.8
1947 Male, age 18, unknown 249.7
2502 Female, age 75, unknown 221.8
1795 Male, age 51, unknown 217.8
Periaquaductal grey, dorsal
nTPM: 236.2
2850 Male, age 76, both hemispheres 322.7
1840 Male, age 53, unknown 235.7
1831 Male, age 72, unknown 214.9
2464 Female, age 72, unknown 171.6
Periaquaductal grey, lateral
nTPM: 265.7
2272 Male, age 74, both hemispheres 301.8
2140 Male, age 76, both hemispheres 268.2
2053 Male, age 18, unknown 227.0
Pretectal area
nTPM: 274.1
2273 Male, age 74, both hemispheres 341.9
1944 Female, age 72, unknown 327.9
1817 Female, age 42, unknown 304.7
2667 Female, age 75, unknown 304.6
2224 Female, age 72, unknown 296.8
1816 Male, age 51, unknown 274.0
2007 Male, age 72, unknown 264.6
1815 Male, age 53, unknown 249.3
2825 Male, age 18, unknown 225.0
2407 Male, age 75, both hemispheres 220.2
2316 Male, age 76, right hemisphere 206.5
Red nucleus
nTPM: 229.3
2725 Female, age 75, unknown 289.2
1821 Female, age 72, unknown 259.2
2823 Male, age 76, right hemisphere 250.7
1954 Female, age 42, unknown 249.6
1865 Male, age 51, unknown 241.0
2503 Female, age 72, unknown 238.0
2785 Male, age 18, unknown 234.8
1904 Male, age 53, unknown 228.2
2769 Male, age 72, unknown 205.2
2227 Male, age 72, unknown 205.0
2584 Male, age 75, left hemisphere 175.4
2588 Male, age 74, left hemisphere 175.1
Substantia nigra
nTPM: 277.1
2241 Male, age 72, unknown 351.4
1916 Female, age 42, unknown 342.2
1889 Female, age 72, unknown 324.0
2409 Female, age 72, unknown 306.0
1851 Male, age 51, unknown 280.9
1941 Male, age 53, unknown 278.9
2699 Male, age 18, unknown 268.1
2665 Male, age 74, both hemispheres 221.1
2590 Female, age 75, unknown 221.0
2583 Male, age 75, right hemisphere 177.1
Superior colliculus
nTPM: 232.7
2587 Male, age 74, left hemisphere 304.5
2087 Female, age 72, unknown 266.7
1796 Male, age 53, unknown 253.9
1913 Female, age 42, unknown 245.7
2261 Male, age 18, unknown 243.7
1895 Male, age 76, right hemisphere 232.4
1839 Male, age 51, unknown 225.1
2668 Female, age 75, unknown 203.1
1995 Male, age 72, unknown 189.1
2664 Male, age 75, both hemispheres 163.1
Ventral tegmental area
nTPM: 271.7
2218 Male, age 76, both hemispheres 303.4
1915 Female, age 42, unknown 289.4
2410 Female, age 72, unknown 269.9
2223 Female, age 72, unknown 265.6
1942 Male, age 51, unknown 256.4
2021 Male, age 53, unknown 245.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 695.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 695.1
Samples: 139

Max nTPM: 1082.8
Min nTPM: 425.4
Std nTPM: 129.8
Median nTPM: 671.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1082.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1034.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1010.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 968.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 952.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 941.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 930.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 928.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 919.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 888.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 878.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 647.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 647.8
FF:10158-103A5 76 years, female 647.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 2.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1.0
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.3
Sample A Female 0.4
Sample B Female 0.3
Sample C Male 1.3
Sample D Male 1.8
Midbrain
nTPM: 2.8
Samples: 4

Max nTPM: 4.8
Min nTPM: 0.6
Sample A Female 0.6
Sample B Female 3.1
Sample C Male 4.8
Sample D Male 2.6
Periaqueductal gray
nTPM: 2.0
Samples: 3

Max nTPM: 2.8
Min nTPM: 1.2
Sample B Female 2.8
Sample C Male 1.2
Sample D Male 2.1
Superior colliculi
nTPM: 1.5
Samples: 4

Max nTPM: 2.3
Min nTPM: 0.3
Sample A Female 0.3
Sample B Female 2.3
Sample C Male 1.7
Sample D Male 1.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 572.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 572.2
Samples: 4

Max nTPM: 578.4
Min nTPM: 558.4
Sample A Male 573.9
Sample B Male 578.4
Sample C Female 578.1
Sample D Female 558.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.4
73573175 Antisense, RP_051121_03_D09, Mouse strain C57BL/6J (56 days, male) 14.4

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