MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:290.8 nTPM
HPA Brain:284.0 nTPM
GTEx:290.8 nTPM
FANTOM5:577.0 Scaled Tags Per Million
Pig:80.9 nTPM
Mouse:89.8 nTPM
Allen mouse:13.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 284.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 242.0
2828 Female, age 72, unknown 284.9
1870 Female, age 42, unknown 275.5
1830 Male, age 51, unknown 267.1
2586 Male, age 75, left hemisphere 266.9
2666 Male, age 74, left hemisphere 259.2
1833 Male, age 53, unknown 252.4
2411 Female, age 72, unknown 231.5
2019 Male, age 18, unknown 223.1
1827 Male, age 72, unknown 192.8
2219 Male, age 76, both hemispheres 166.3
Dorsal raphe nucleus
nTPM: 221.6
2016 Female, age 72, unknown 283.5
1828 Male, age 53, unknown 242.1
2750 Male, age 76, both hemispheres 221.2
2047 Male, age 72, unknown 211.1
2298 Female, age 72, unknown 149.9
Inferior colliculus
nTPM: 190.2
1848 Female, age 42, unknown 209.9
2849 Male, age 72, unknown 199.4
1890 Male, age 53, unknown 198.8
2097 Female, age 72, unknown 152.9
Median raphe nucleus
nTPM: 197.6
2220 Male, age 76, midline 197.6
Periaquaductal grey, anterior
nTPM: 179.0
2502 Female, age 75, unknown 186.8
1947 Male, age 18, unknown 177.1
1795 Male, age 51, unknown 173.1
Periaquaductal grey, dorsal
nTPM: 195.8
2850 Male, age 76, both hemispheres 208.9
2464 Female, age 72, unknown 204.8
1831 Male, age 72, unknown 203.5
1840 Male, age 53, unknown 166.2
Periaquaductal grey, lateral
nTPM: 192.3
2053 Male, age 18, unknown 221.7
2140 Male, age 76, both hemispheres 202.0
2272 Male, age 74, both hemispheres 153.4
Pretectal area
nTPM: 179.3
1815 Male, age 53, unknown 225.6
2316 Male, age 76, right hemisphere 220.6
2407 Male, age 75, both hemispheres 219.3
2825 Male, age 18, unknown 204.3
1817 Female, age 42, unknown 192.9
2224 Female, age 72, unknown 169.3
2273 Male, age 74, both hemispheres 157.2
2007 Male, age 72, unknown 155.7
1944 Female, age 72, unknown 152.1
2667 Female, age 75, unknown 143.9
1816 Male, age 51, unknown 131.9
Red nucleus
nTPM: 284.0
1865 Male, age 51, unknown 328.9
1904 Male, age 53, unknown 311.1
1954 Female, age 42, unknown 307.1
2503 Female, age 72, unknown 302.8
2588 Male, age 74, left hemisphere 297.3
2823 Male, age 76, right hemisphere 290.7
2227 Male, age 72, unknown 283.8
2769 Male, age 72, unknown 281.8
1821 Female, age 72, unknown 272.9
2725 Female, age 75, unknown 256.0
2785 Male, age 18, unknown 246.9
2584 Male, age 75, left hemisphere 229.2
Substantia nigra
nTPM: 220.6
2699 Male, age 18, unknown 271.7
2409 Female, age 72, unknown 243.9
2590 Female, age 75, unknown 243.6
2583 Male, age 75, right hemisphere 238.8
1851 Male, age 51, unknown 235.8
2665 Male, age 74, both hemispheres 231.0
2241 Male, age 72, unknown 199.5
1889 Female, age 72, unknown 193.2
1941 Male, age 53, unknown 176.5
1916 Female, age 42, unknown 171.7
Superior colliculus
nTPM: 223.8
1995 Male, age 72, unknown 312.7
1913 Female, age 42, unknown 311.4
2668 Female, age 75, unknown 253.8
2587 Male, age 74, left hemisphere 226.8
1839 Male, age 51, unknown 213.0
2664 Male, age 75, both hemispheres 208.7
1895 Male, age 76, right hemisphere 192.0
2087 Female, age 72, unknown 183.7
1796 Male, age 53, unknown 175.0
2261 Male, age 18, unknown 160.8
Ventral tegmental area
nTPM: 215.7
2223 Female, age 72, unknown 227.2
2410 Female, age 72, unknown 226.2
2021 Male, age 53, unknown 223.3
1942 Male, age 51, unknown 216.8
1915 Female, age 42, unknown 216.3
2218 Male, age 76, both hemispheres 184.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 290.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 290.8
Samples: 139

Max nTPM: 726.0
Min nTPM: 68.3
Std nTPM: 138.8
Median nTPM: 247.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 726.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 711.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 679.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 619.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 612.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 606.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 586.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 581.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 562.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 528.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 517.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 577.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 577.0
FF:10158-103A5 76 years, female 577.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 80.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 73.8
Samples: 4

Max nTPM: 84.2
Min nTPM: 60.1
Sample A Female 83.4
Sample B Female 60.1
Sample C Male 67.5
Sample D Male 84.2
Midbrain
nTPM: 71.6
Samples: 4

Max nTPM: 97.3
Min nTPM: 46.1
Sample A Female 97.3
Sample B Female 61.4
Sample C Male 81.5
Sample D Male 46.1
Periaqueductal gray
nTPM: 52.8
Samples: 3

Max nTPM: 60.9
Min nTPM: 37.4
Sample B Female 60.1
Sample C Male 60.9
Sample D Male 37.4
Superior colliculi
nTPM: 80.9
Samples: 4

Max nTPM: 126.5
Min nTPM: 58.0
Sample A Female 77.4
Sample B Female 61.5
Sample C Male 126.5
Sample D Male 58.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 89.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 89.8
Samples: 4

Max nTPM: 91.1
Min nTPM: 87.1
Sample A Male 87.1
Sample B Male 90.2
Sample C Female 91.1
Sample D Female 90.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.3
79556599 Antisense, RP_071018_02_A06, Mouse strain C57BL/6J (56 days, male) 13.3
79360312 Antisense, RP_071018_02_A06, Mouse strain C57BL/6J (56 days, male) 7.2

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