MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:122.5 nTPM
HPA Brain:56.2 nTPM
GTEx:122.5 nTPM
FANTOM5:23.4 Scaled Tags Per Million
Pig:62.6 nTPM
Mouse:6.5 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.3
2828 Female, age 72, unknown 51.6
1833 Male, age 53, unknown 46.4
1870 Female, age 42, unknown 43.6
2586 Male, age 75, left hemisphere 39.4
1827 Male, age 72, unknown 36.2
2219 Male, age 76, both hemispheres 36.1
2411 Female, age 72, unknown 35.5
2019 Male, age 18, unknown 34.1
1830 Male, age 51, unknown 33.2
2666 Male, age 74, left hemisphere 26.4
Dorsal raphe nucleus
nTPM: 56.2
2298 Female, age 72, unknown 72.4
2016 Female, age 72, unknown 63.4
1828 Male, age 53, unknown 54.0
2047 Male, age 72, unknown 46.4
2750 Male, age 76, both hemispheres 45.0
Inferior colliculus
nTPM: 34.3
1890 Male, age 53, unknown 38.8
2097 Female, age 72, unknown 38.4
2849 Male, age 72, unknown 34.4
1848 Female, age 42, unknown 25.5
Median raphe nucleus
nTPM: 41.4
2220 Male, age 76, midline 41.4
Periaquaductal grey, anterior
nTPM: 30.3
1795 Male, age 51, unknown 36.9
2502 Female, age 75, unknown 28.0
1947 Male, age 18, unknown 26.1
Periaquaductal grey, dorsal
nTPM: 50.6
2850 Male, age 76, both hemispheres 69.4
1840 Male, age 53, unknown 50.4
1831 Male, age 72, unknown 46.2
2464 Female, age 72, unknown 36.4
Periaquaductal grey, lateral
nTPM: 51.3
2053 Male, age 18, unknown 61.1
2140 Male, age 76, both hemispheres 49.1
2272 Male, age 74, both hemispheres 43.7
Pretectal area
nTPM: 45.7
2273 Male, age 74, both hemispheres 73.0
1944 Female, age 72, unknown 70.7
1816 Male, age 51, unknown 51.8
2667 Female, age 75, unknown 51.2
1815 Male, age 53, unknown 47.7
1817 Female, age 42, unknown 39.9
2825 Male, age 18, unknown 39.4
2407 Male, age 75, both hemispheres 37.9
2007 Male, age 72, unknown 33.0
2224 Female, age 72, unknown 31.9
2316 Male, age 76, right hemisphere 26.3
Red nucleus
nTPM: 44.6
2823 Male, age 76, right hemisphere 54.9
1954 Female, age 42, unknown 51.4
1904 Male, age 53, unknown 50.6
2503 Female, age 72, unknown 50.0
2584 Male, age 75, left hemisphere 50.0
1865 Male, age 51, unknown 46.2
2227 Male, age 72, unknown 45.6
1821 Female, age 72, unknown 42.4
2769 Male, age 72, unknown 42.3
2725 Female, age 75, unknown 37.8
2785 Male, age 18, unknown 33.5
2588 Male, age 74, left hemisphere 30.9
Substantia nigra
nTPM: 44.3
2699 Male, age 18, unknown 54.0
2665 Male, age 74, both hemispheres 49.9
2590 Female, age 75, unknown 48.8
2583 Male, age 75, right hemisphere 46.4
2241 Male, age 72, unknown 46.0
2409 Female, age 72, unknown 45.4
1851 Male, age 51, unknown 41.3
1889 Female, age 72, unknown 39.3
1916 Female, age 42, unknown 37.8
1941 Male, age 53, unknown 33.8
Superior colliculus
nTPM: 49.3
1995 Male, age 72, unknown 78.1
1913 Female, age 42, unknown 62.1
2087 Female, age 72, unknown 61.3
2261 Male, age 18, unknown 58.9
2668 Female, age 75, unknown 45.3
2664 Male, age 75, both hemispheres 42.2
2587 Male, age 74, left hemisphere 39.5
1895 Male, age 76, right hemisphere 37.2
1796 Male, age 53, unknown 36.5
1839 Male, age 51, unknown 32.2
Ventral tegmental area
nTPM: 40.0
1942 Male, age 51, unknown 46.0
1915 Female, age 42, unknown 43.1
2218 Male, age 76, both hemispheres 41.7
2410 Female, age 72, unknown 39.9
2021 Male, age 53, unknown 37.8
2223 Female, age 72, unknown 31.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 122.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 122.5
Samples: 139

Max nTPM: 295.8
Min nTPM: 30.6
Std nTPM: 46.5
Median nTPM: 120.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 295.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 256.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 251.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 232.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 229.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 214.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 210.4
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 203.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 195.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 194.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 189.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.4
FF:10158-103A5 76 years, female 23.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 62.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.2
Samples: 4

Max nTPM: 27.6
Min nTPM: 11.2
Sample A Female 15.1
Sample B Female 27.6
Sample C Male 15.0
Sample D Male 11.2
Midbrain
nTPM: 9.8
Samples: 4

Max nTPM: 15.8
Min nTPM: 5.5
Sample A Female 15.8
Sample B Female 10.1
Sample C Male 7.9
Sample D Male 5.5
Periaqueductal gray
nTPM: 7.3
Samples: 3

Max nTPM: 9.6
Min nTPM: 6.1
Sample B Female 6.1
Sample C Male 6.2
Sample D Male 9.6
Superior colliculi
nTPM: 62.7
Samples: 4

Max nTPM: 185.6
Min nTPM: 6.4
Sample A Female 48.5
Sample B Female 185.6
Sample C Male 6.4
Sample D Male 10.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.5
Samples: 4

Max nTPM: 8.2
Min nTPM: 5.4
Sample A Male 8.2
Sample B Male 5.4
Sample C Female 6.7
Sample D Female 5.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68076899 Antisense, RP_040929_01_A02, Mouse strain C57BL/6J (56 days, male) 0.3

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