HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:15.9 nTPM
HPA Brain:12.1 nTPM
GTEx:15.9 nTPM
FANTOM5:68.7 Scaled Tags Per Million
Pig:38.4 nTPM
Mouse:17.8 nTPM
Allen mouse:0.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA005709
Glial cells Low
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 12.1
Sample id Sample description nTPM
Hippocampus
nTPM: 10.9
1898 Male, age 80, left hemisphere 14.4
1855 Male, age 76, left hemisphere 13.0
1911 Female, age 85, right hemisphere 10.3
2529 Female, age 94, left hemisphere 10.1
2148 Female, age 91, left hemisphere 9.1
2621 Female, age 67, right hemisphere 8.3
Dentate gyrus
nTPM: 10.2
2010 Male, age 76, both hemispheres 12.4
2530 Female, age 94, left hemisphere 11.6
1927 Female, age 91, both hemispheres 10.8
2528 Male, age 74, both hemispheres 9.9
2246 Female, age 85, both hemispheres 9.5
2531 Female, age 67, both hemispheres 7.1
Entorhinal gyrus
nTPM: 9.0
1938 Female, age 85, left hemisphere 12.5
1787 Male, age 76, left hemisphere 9.2
2117 Female, age 91, right hemisphere 8.9
2686 Male, age 75, right hemisphere 8.7
2613 Female, age 94, left hemisphere 7.6
2764 Male, age 80, right hemisphere 7.1
Hippocampus, CA1
nTPM: 12.0
2749 Male, age 80, left hemisphere 17.0
1873 Female, age 85, both hemispheres 13.0
2527 Male, age 74, both hemispheres 11.0
2045 Male, age 76, both hemispheres 10.0
2082 Female, age 91, right hemisphere 9.1
Hippocampus, CA2
nTPM: 12.1
1892 Male, age 76, both hemispheres 15.3
1963 Male, age 80, left hemisphere 14.6
2249 Male, age 74, both hemispheres 13.1
1940 Female, age 85, left hemisphere 10.3
2437 Female, age 94, left hemisphere 9.8
2113 Female, age 91, right hemisphere 9.5
Hippocampus, CA3
nTPM: 10.2
2137 Male, age 80, left hemisphere 13.3
1867 Male, age 76, both hemispheres 13.1
1891 Female, age 85, both hemispheres 11.5
2436 Male, age 74, both hemispheres 10.9
2620 Female, age 94, left hemisphere 6.4
2861 Female, age 67, both hemispheres 6.0
Parahippocampal cortex
nTPM: 10.1
1850 Male, age 80, both hemispheres 13.4
1933 Female, age 85, both hemispheres 11.4
2693 Female, age 94, both hemispheres 11.3
1990 Female, age 91, right hemisphere 10.6
2245 Female, age 91, both hemispheres 10.6
2532 Female, age 72, left hemisphere 10.0
2250 Female, age 67, right hemisphere 9.8
2018 Male, age 76, both hemispheres 9.6
2692 Male, age 74, both hemispheres 9.1
2622 Female, age 67, right hemisphere 5.2
Perirhinal gyrus
nTPM: 11.4
1841 Female, age 85, right hemisphere 12.6
1794 Male, age 80, right hemisphere 11.7
2848 Male, age 76, right hemisphere 11.4
2521 Female, age 94, right hemisphere 11.2
1847 Female, age 91, left hemisphere 10.0
Subiculum
nTPM: 10.0
1901 Male, age 80, both hemispheres 12.0
1977 Female, age 85, both hemispheres 11.0
2438 Female, age 94, left hemisphere 11.0
2042 Male, age 76, both hemispheres 9.7
2729 Female, age 91, right hemisphere 9.4
2619 Male, age 74, both hemispheres 6.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 15.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 15.9
Samples: 197

Max nTPM: 27.9
Min nTPM: 6.6
Std nTPM: 3.5
Median nTPM: 15.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 27.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 26.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 26.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 26.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 24.3
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 24.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 23.5
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 23.2
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 23.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 22.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 22.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 68.7
FF:10169-103B7 60 years, female 87.2
FF:10153-102I9 76 years, female 50.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 38.4
Pig sample Sample description nTPM
Subiculum
nTPM: 36.3
Samples: 4

Max nTPM: 39.6
Min nTPM: 31.5
Sample A Female 39.6
Sample B Female 35.6
Sample C Male 31.5
Sample D Male 38.3
Dorsal hippocampus
nTPM: 37.6
Samples: 4

Max nTPM: 42.4
Min nTPM: 35.5
Sample A Female 42.4
Sample B Female 36.7
Sample C Male 35.9
Sample D Male 35.5
Entorhinal cortex
nTPM: 38.4
Samples: 4

Max nTPM: 40.9
Min nTPM: 37.4
Sample A Female 37.9
Sample B Female 40.9
Sample C Male 37.4
Sample D Male 37.5
Ventral hippocampus
nTPM: 32.5
Samples: 4

Max nTPM: 36.9
Min nTPM: 27.4
Sample A Female 36.9
Sample B Female 34.6
Sample C Male 27.4
Sample D Male 31.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 17.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 17.8
Samples: 4

Max nTPM: 18.8
Min nTPM: 16.6
Sample A Male 17.1
Sample B Male 18.8
Sample C Female 16.6
Sample D Female 18.7
Hippocampal formation
nTPM: 14.5
Samples: 4

Max nTPM: 15.4
Min nTPM: 13.7
Sample A Male 15.1
Sample B Male 13.7
Sample C Female 13.8
Sample D Female 15.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
70474017 Antisense, RP_050614_04_G03, Mouse strain C57BL/6J (56 days, male) 0.1

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