MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.6 nTPM
HPA Brain:54.1 nTPM
GTEx:42.6 nTPM
FANTOM5:8.1 Scaled Tags Per Million
Pig:91.1 nTPM
Mouse:119.3 nTPM
Allen mouse:8.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.3
2586 Male, age 75, left hemisphere 62.1
2219 Male, age 76, both hemispheres 59.1
1827 Male, age 72, unknown 52.0
2828 Female, age 72, unknown 46.8
1870 Female, age 42, unknown 45.2
1833 Male, age 53, unknown 43.8
2411 Female, age 72, unknown 42.2
1830 Male, age 51, unknown 39.1
2666 Male, age 74, left hemisphere 26.2
2019 Male, age 18, unknown 25.9
Dorsal raphe nucleus
nTPM: 44.6
2047 Male, age 72, unknown 47.6
2750 Male, age 76, both hemispheres 47.0
2298 Female, age 72, unknown 45.3
1828 Male, age 53, unknown 42.0
2016 Female, age 72, unknown 41.2
Inferior colliculus
nTPM: 44.5
2849 Male, age 72, unknown 49.3
1848 Female, age 42, unknown 44.5
2097 Female, age 72, unknown 44.4
1890 Male, age 53, unknown 39.8
Median raphe nucleus
nTPM: 52.9
2220 Male, age 76, midline 52.9
Periaquaductal grey, anterior
nTPM: 54.1
1947 Male, age 18, unknown 57.0
2502 Female, age 75, unknown 55.5
1795 Male, age 51, unknown 49.9
Periaquaductal grey, dorsal
nTPM: 43.1
1840 Male, age 53, unknown 51.0
2464 Female, age 72, unknown 46.4
2850 Male, age 76, both hemispheres 43.0
1831 Male, age 72, unknown 32.0
Periaquaductal grey, lateral
nTPM: 43.8
2053 Male, age 18, unknown 50.2
2140 Male, age 76, both hemispheres 48.5
2272 Male, age 74, both hemispheres 32.7
Pretectal area
nTPM: 44.6
2224 Female, age 72, unknown 56.2
2825 Male, age 18, unknown 53.2
1816 Male, age 51, unknown 48.5
2667 Female, age 75, unknown 47.2
1815 Male, age 53, unknown 46.9
2007 Male, age 72, unknown 44.9
2316 Male, age 76, right hemisphere 44.4
1817 Female, age 42, unknown 44.3
1944 Female, age 72, unknown 42.5
2407 Male, age 75, both hemispheres 32.6
2273 Male, age 74, both hemispheres 30.0
Red nucleus
nTPM: 40.2
2725 Female, age 75, unknown 52.5
2588 Male, age 74, left hemisphere 46.1
2503 Female, age 72, unknown 42.7
2227 Male, age 72, unknown 41.6
2769 Male, age 72, unknown 41.6
2584 Male, age 75, left hemisphere 41.4
1954 Female, age 42, unknown 40.7
1821 Female, age 72, unknown 38.3
1865 Male, age 51, unknown 38.0
1904 Male, age 53, unknown 37.4
2823 Male, age 76, right hemisphere 32.7
2785 Male, age 18, unknown 29.1
Substantia nigra
nTPM: 37.6
2665 Male, age 74, both hemispheres 50.0
2699 Male, age 18, unknown 45.3
2583 Male, age 75, right hemisphere 40.9
1889 Female, age 72, unknown 40.7
2241 Male, age 72, unknown 37.4
1851 Male, age 51, unknown 37.3
1916 Female, age 42, unknown 33.3
2409 Female, age 72, unknown 30.7
2590 Female, age 75, unknown 30.6
1941 Male, age 53, unknown 30.2
Superior colliculus
nTPM: 41.4
2261 Male, age 18, unknown 50.4
1796 Male, age 53, unknown 49.3
1839 Male, age 51, unknown 46.6
1895 Male, age 76, right hemisphere 45.7
2087 Female, age 72, unknown 41.7
2664 Male, age 75, both hemispheres 39.9
1913 Female, age 42, unknown 36.3
2587 Male, age 74, left hemisphere 36.3
2668 Female, age 75, unknown 34.0
1995 Male, age 72, unknown 33.4
Ventral tegmental area
nTPM: 40.6
2223 Female, age 72, unknown 46.1
2218 Male, age 76, both hemispheres 43.0
1942 Male, age 51, unknown 39.6
2021 Male, age 53, unknown 39.3
1915 Female, age 42, unknown 38.7
2410 Female, age 72, unknown 36.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.6
Samples: 139

Max nTPM: 101.2
Min nTPM: 9.5
Std nTPM: 17.0
Median nTPM: 39.6
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 101.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 88.6
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 79.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 79.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 78.5
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 76.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 72.2
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 71.4
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 71.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 69.7
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 69.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.1
FF:10158-103A5 76 years, female 8.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 91.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 83.2
Samples: 4

Max nTPM: 111.5
Min nTPM: 58.4
Sample A Female 111.5
Sample B Female 58.4
Sample C Male 97.2
Sample D Male 65.5
Midbrain
nTPM: 85.2
Samples: 4

Max nTPM: 111.3
Min nTPM: 58.7
Sample A Female 89.0
Sample B Female 81.9
Sample C Male 111.3
Sample D Male 58.7
Periaqueductal gray
nTPM: 91.1
Samples: 3

Max nTPM: 102.9
Min nTPM: 81.6
Sample B Female 88.7
Sample C Male 102.9
Sample D Male 81.6
Superior colliculi
nTPM: 65.7
Samples: 4

Max nTPM: 79.7
Min nTPM: 40.6
Sample A Female 76.6
Sample B Female 40.6
Sample C Male 79.7
Sample D Male 65.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 119.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 119.4
Samples: 4

Max nTPM: 127.6
Min nTPM: 114.6
Sample A Male 127.6
Sample B Male 117.5
Sample C Female 114.6
Sample D Female 117.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.0
70528557 Antisense, RP_050623_02_H02, Mouse strain C57BL/6J (56 days, male) 9.2
73931385 Antisense, RP_051214_04_D12, Mouse strain C57BL/6J (56 days, male) 6.8

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