MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.6 nTPM
HPA Brain:29.3 nTPM
GTEx:29.6 nTPM
FANTOM5:39.2 Scaled Tags Per Million
Pig:36.1 nTPM
Mouse:33.4 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.7
1827 Male, age 72, unknown 29.7
2411 Female, age 72, unknown 25.1
2019 Male, age 18, unknown 24.5
1870 Female, age 42, unknown 24.3
2828 Female, age 72, unknown 21.4
1833 Male, age 53, unknown 20.8
2219 Male, age 76, both hemispheres 20.7
2666 Male, age 74, left hemisphere 19.1
1830 Male, age 51, unknown 19.0
2586 Male, age 75, left hemisphere 12.8
Dorsal raphe nucleus
nTPM: 23.8
2298 Female, age 72, unknown 31.1
2750 Male, age 76, both hemispheres 26.2
1828 Male, age 53, unknown 21.5
2047 Male, age 72, unknown 20.4
2016 Female, age 72, unknown 19.9
Inferior colliculus
nTPM: 22.9
2097 Female, age 72, unknown 28.2
1890 Male, age 53, unknown 23.3
1848 Female, age 42, unknown 21.5
2849 Male, age 72, unknown 18.7
Median raphe nucleus
nTPM: 27.3
2220 Male, age 76, midline 27.3
Periaquaductal grey, anterior
nTPM: 26.2
1947 Male, age 18, unknown 27.1
2502 Female, age 75, unknown 26.3
1795 Male, age 51, unknown 25.2
Periaquaductal grey, dorsal
nTPM: 23.7
2850 Male, age 76, both hemispheres 25.5
1831 Male, age 72, unknown 24.5
1840 Male, age 53, unknown 23.8
2464 Female, age 72, unknown 21.0
Periaquaductal grey, lateral
nTPM: 25.6
2272 Male, age 74, both hemispheres 29.5
2053 Male, age 18, unknown 24.9
2140 Male, age 76, both hemispheres 22.3
Pretectal area
nTPM: 29.3
1816 Male, age 51, unknown 39.6
1944 Female, age 72, unknown 33.3
2273 Male, age 74, both hemispheres 33.3
2667 Female, age 75, unknown 32.0
2007 Male, age 72, unknown 31.8
1815 Male, age 53, unknown 31.0
1817 Female, age 42, unknown 30.1
2224 Female, age 72, unknown 27.4
2316 Male, age 76, right hemisphere 25.0
2825 Male, age 18, unknown 20.8
2407 Male, age 75, both hemispheres 17.9
Red nucleus
nTPM: 22.2
2725 Female, age 75, unknown 27.2
1821 Female, age 72, unknown 27.1
2503 Female, age 72, unknown 24.1
2823 Male, age 76, right hemisphere 23.1
1904 Male, age 53, unknown 22.6
1865 Male, age 51, unknown 22.3
2785 Male, age 18, unknown 21.5
1954 Female, age 42, unknown 20.6
2584 Male, age 75, left hemisphere 20.6
2588 Male, age 74, left hemisphere 19.6
2227 Male, age 72, unknown 19.1
2769 Male, age 72, unknown 18.9
Substantia nigra
nTPM: 25.5
1916 Female, age 42, unknown 31.8
1889 Female, age 72, unknown 31.4
2241 Male, age 72, unknown 30.8
1851 Male, age 51, unknown 26.2
2409 Female, age 72, unknown 26.0
1941 Male, age 53, unknown 23.5
2665 Male, age 74, both hemispheres 23.1
2699 Male, age 18, unknown 22.1
2590 Female, age 75, unknown 21.8
2583 Male, age 75, right hemisphere 18.4
Superior colliculus
nTPM: 24.5
2261 Male, age 18, unknown 33.1
1796 Male, age 53, unknown 27.5
2587 Male, age 74, left hemisphere 27.1
2087 Female, age 72, unknown 26.5
1913 Female, age 42, unknown 26.0
1895 Male, age 76, right hemisphere 24.8
1995 Male, age 72, unknown 23.0
2668 Female, age 75, unknown 20.1
1839 Male, age 51, unknown 19.2
2664 Male, age 75, both hemispheres 17.5
Ventral tegmental area
nTPM: 24.8
2218 Male, age 76, both hemispheres 29.7
1915 Female, age 42, unknown 25.8
2410 Female, age 72, unknown 25.2
1942 Male, age 51, unknown 24.6
2021 Male, age 53, unknown 22.6
2223 Female, age 72, unknown 20.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.6
Samples: 139

Max nTPM: 43.1
Min nTPM: 19.3
Std nTPM: 5.2
Median nTPM: 29.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 43.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 42.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 42.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 42.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 42.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 41.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 40.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 39.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 39.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 38.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 38.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.2
FF:10158-103A5 76 years, female 39.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.2
Samples: 4

Max nTPM: 33.5
Min nTPM: 28.8
Sample A Female 33.5
Sample B Female 28.8
Sample C Male 30.4
Sample D Male 32.2
Midbrain
nTPM: 36.1
Samples: 4

Max nTPM: 46.9
Min nTPM: 27.6
Sample A Female 46.9
Sample B Female 33.9
Sample C Male 36.1
Sample D Male 27.6
Periaqueductal gray
nTPM: 30.5
Samples: 3

Max nTPM: 32.7
Min nTPM: 27.6
Sample B Female 31.2
Sample C Male 32.7
Sample D Male 27.6
Superior colliculi
nTPM: 33.7
Samples: 4

Max nTPM: 38.3
Min nTPM: 31.4
Sample A Female 33.2
Sample B Female 31.8
Sample C Male 38.3
Sample D Male 31.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.4
Samples: 4

Max nTPM: 34.9
Min nTPM: 31.8
Sample A Male 32.4
Sample B Male 31.8
Sample C Female 34.9
Sample D Female 34.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
70546197 Antisense, RP_050623_03_G03, Mouse strain C57BL/6J (56 days, male) 2.1
70919884 Antisense, RP_050713_02_C03, Mouse strain C57BL/6J (56 days, male) 0.2

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