HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:93.1 nTPM
HPA Brain:90.4 nTPM
GTEx:93.1 nTPM
FANTOM5:507.5 Scaled Tags Per Million
Pig:148.1 nTPM
Mouse:215.1 nTPM
Allen mouse:1.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 90.4
Sample id Sample description nTPM
Hippocampus
nTPM: 77.5
1898 Male, age 80, left hemisphere 99.6
2621 Female, age 67, right hemisphere 82.5
2529 Female, age 94, left hemisphere 79.7
1855 Male, age 76, left hemisphere 78.4
1911 Female, age 85, right hemisphere 64.3
2148 Female, age 91, left hemisphere 60.4
Dentate gyrus
nTPM: 79.0
2530 Female, age 94, left hemisphere 93.5
2010 Male, age 76, both hemispheres 89.8
1927 Female, age 91, both hemispheres 87.5
2246 Female, age 85, both hemispheres 79.4
2531 Female, age 67, both hemispheres 63.9
2528 Male, age 74, both hemispheres 60.0
Entorhinal gyrus
nTPM: 71.6
2764 Male, age 80, right hemisphere 82.9
1938 Female, age 85, left hemisphere 81.5
1787 Male, age 76, left hemisphere 75.7
2613 Female, age 94, left hemisphere 74.3
2117 Female, age 91, right hemisphere 58.3
2686 Male, age 75, right hemisphere 57.1
Hippocampus, CA1
nTPM: 83.9
2749 Male, age 80, left hemisphere 123.4
1873 Female, age 85, both hemispheres 84.6
2527 Male, age 74, both hemispheres 73.2
2045 Male, age 76, both hemispheres 72.0
2082 Female, age 91, right hemisphere 66.6
Hippocampus, CA2
nTPM: 77.9
1892 Male, age 76, both hemispheres 99.3
1963 Male, age 80, left hemisphere 84.5
2249 Male, age 74, both hemispheres 82.5
1940 Female, age 85, left hemisphere 71.0
2437 Female, age 94, left hemisphere 67.5
2113 Female, age 91, right hemisphere 62.4
Hippocampus, CA3
nTPM: 78.9
2137 Male, age 80, left hemisphere 99.4
1867 Male, age 76, both hemispheres 94.0
2620 Female, age 94, left hemisphere 77.6
1891 Female, age 85, both hemispheres 73.4
2436 Male, age 74, both hemispheres 66.8
2861 Female, age 67, both hemispheres 62.0
Parahippocampal cortex
nTPM: 78.4
1850 Male, age 80, both hemispheres 93.9
2245 Female, age 91, both hemispheres 91.2
2250 Female, age 67, right hemisphere 86.9
2532 Female, age 72, left hemisphere 85.4
1990 Female, age 91, right hemisphere 82.5
1933 Female, age 85, both hemispheres 80.5
2693 Female, age 94, both hemispheres 73.9
2018 Male, age 76, both hemispheres 73.6
2622 Female, age 67, right hemisphere 58.0
2692 Male, age 74, both hemispheres 57.9
Perirhinal gyrus
nTPM: 90.4
1847 Female, age 91, left hemisphere 105.1
1794 Male, age 80, right hemisphere 97.5
1841 Female, age 85, right hemisphere 92.9
2521 Female, age 94, right hemisphere 86.0
2848 Male, age 76, right hemisphere 70.6
Subiculum
nTPM: 77.3
2042 Male, age 76, both hemispheres 89.6
1901 Male, age 80, both hemispheres 89.0
1977 Female, age 85, both hemispheres 86.2
2438 Female, age 94, left hemisphere 74.9
2619 Male, age 74, both hemispheres 70.0
2729 Female, age 91, right hemisphere 53.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 93.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 93.1
Samples: 197

Max nTPM: 184.2
Min nTPM: 43.1
Std nTPM: 25.8
Median nTPM: 90.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 184.2
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 158.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 155.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 150.1
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 148.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 148.1
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 144.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 142.9
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 139.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 138.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 137.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 507.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 507.5
FF:10169-103B7 60 years, female 641.8
FF:10153-102I9 76 years, female 373.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 148.1
Pig sample Sample description nTPM
Subiculum
nTPM: 134.5
Samples: 4

Max nTPM: 178.4
Min nTPM: 115.8
Sample A Female 178.4
Sample B Female 127.6
Sample C Male 116.3
Sample D Male 115.8
Dorsal hippocampus
nTPM: 148.2
Samples: 4

Max nTPM: 194.1
Min nTPM: 122.5
Sample A Female 194.1
Sample B Female 150.8
Sample C Male 125.2
Sample D Male 122.5
Entorhinal cortex
nTPM: 141.4
Samples: 4

Max nTPM: 159.9
Min nTPM: 121.5
Sample A Female 159.9
Sample B Female 155.8
Sample C Male 121.5
Sample D Male 128.2
Ventral hippocampus
nTPM: 122.7
Samples: 4

Max nTPM: 156.5
Min nTPM: 94.2
Sample A Female 108.1
Sample B Female 94.2
Sample C Male 132.0
Sample D Male 156.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 215.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 181.7
Samples: 4

Max nTPM: 190.5
Min nTPM: 173.7
Sample A Male 173.7
Sample B Male 187.2
Sample C Female 190.5
Sample D Female 175.2
Hippocampal formation
nTPM: 215.1
Samples: 4

Max nTPM: 225.7
Min nTPM: 204.8
Sample A Male 225.7
Sample B Male 210.5
Sample C Female 219.3
Sample D Female 204.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.7
75651231 Antisense, RP_060518_01_D09, Mouse strain C57BL/6J (56 days, male) 2.0
74357596 Antisense, RP_060117_01_A11, Mouse strain C57BL/6J (56 days, male) 1.4

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