MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.6 nTPM
HPA Brain:63.0 nTPM
GTEx:45.6 nTPM
FANTOM5:191.4 Scaled Tags Per Million
Pig:235.3 nTPM
Mouse:107.4 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 63.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.6
2019 Male, age 18, unknown 64.0
1827 Male, age 72, unknown 62.8
2828 Female, age 72, unknown 62.2
2411 Female, age 72, unknown 60.6
1870 Female, age 42, unknown 57.9
2666 Male, age 74, left hemisphere 52.0
1833 Male, age 53, unknown 50.3
1830 Male, age 51, unknown 48.4
2586 Male, age 75, left hemisphere 48.0
2219 Male, age 76, both hemispheres 39.4
Dorsal raphe nucleus
nTPM: 60.4
2298 Female, age 72, unknown 71.1
2750 Male, age 76, both hemispheres 60.0
2016 Female, age 72, unknown 58.8
1828 Male, age 53, unknown 57.1
2047 Male, age 72, unknown 55.0
Inferior colliculus
nTPM: 57.3
2097 Female, age 72, unknown 65.9
1890 Male, age 53, unknown 61.1
1848 Female, age 42, unknown 54.9
2849 Male, age 72, unknown 47.4
Median raphe nucleus
nTPM: 62.3
2220 Male, age 76, midline 62.3
Periaquaductal grey, anterior
nTPM: 55.1
1795 Male, age 51, unknown 57.1
2502 Female, age 75, unknown 56.6
1947 Male, age 18, unknown 51.5
Periaquaductal grey, dorsal
nTPM: 56.0
2850 Male, age 76, both hemispheres 59.3
1831 Male, age 72, unknown 56.7
1840 Male, age 53, unknown 54.5
2464 Female, age 72, unknown 53.5
Periaquaductal grey, lateral
nTPM: 53.6
2053 Male, age 18, unknown 55.2
2272 Male, age 74, both hemispheres 53.7
2140 Male, age 76, both hemispheres 52.0
Pretectal area
nTPM: 63.0
1817 Female, age 42, unknown 78.3
1816 Male, age 51, unknown 75.8
1944 Female, age 72, unknown 71.7
1815 Male, age 53, unknown 67.9
2007 Male, age 72, unknown 65.4
2667 Female, age 75, unknown 62.4
2273 Male, age 74, both hemispheres 62.0
2316 Male, age 76, right hemisphere 56.9
2224 Female, age 72, unknown 56.7
2825 Male, age 18, unknown 51.0
2407 Male, age 75, both hemispheres 44.2
Red nucleus
nTPM: 56.7
1821 Female, age 72, unknown 63.8
2503 Female, age 72, unknown 61.7
2725 Female, age 75, unknown 61.4
1865 Male, age 51, unknown 59.9
1904 Male, age 53, unknown 59.2
2785 Male, age 18, unknown 59.1
2823 Male, age 76, right hemisphere 55.4
1954 Female, age 42, unknown 55.0
2227 Male, age 72, unknown 52.8
2769 Male, age 72, unknown 52.4
2584 Male, age 75, left hemisphere 52.1
2588 Male, age 74, left hemisphere 48.1
Substantia nigra
nTPM: 60.0
1889 Female, age 72, unknown 72.7
2241 Male, age 72, unknown 65.6
1851 Male, age 51, unknown 61.6
2665 Male, age 74, both hemispheres 60.9
2590 Female, age 75, unknown 60.1
1916 Female, age 42, unknown 60.0
2409 Female, age 72, unknown 59.5
1941 Male, age 53, unknown 54.9
2583 Male, age 75, right hemisphere 53.0
2699 Male, age 18, unknown 51.7
Superior colliculus
nTPM: 56.8
2261 Male, age 18, unknown 66.1
1913 Female, age 42, unknown 64.0
2087 Female, age 72, unknown 63.5
1995 Male, age 72, unknown 62.5
2587 Male, age 74, left hemisphere 61.5
1796 Male, age 53, unknown 60.3
2668 Female, age 75, unknown 49.8
1895 Male, age 76, right hemisphere 48.4
1839 Male, age 51, unknown 46.8
2664 Male, age 75, both hemispheres 44.5
Ventral tegmental area
nTPM: 58.1
2410 Female, age 72, unknown 69.6
2218 Male, age 76, both hemispheres 57.8
2223 Female, age 72, unknown 56.1
1942 Male, age 51, unknown 55.9
2021 Male, age 53, unknown 55.4
1915 Female, age 42, unknown 53.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.6
Samples: 139

Max nTPM: 101.8
Min nTPM: 25.0
Std nTPM: 12.1
Median nTPM: 43.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 101.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 96.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 79.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 74.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 70.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 70.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 69.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 66.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 65.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 65.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 60.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 191.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 191.4
FF:10158-103A5 76 years, female 191.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 235.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 232.7
Samples: 4

Max nTPM: 264.9
Min nTPM: 205.5
Sample A Female 264.9
Sample B Female 205.5
Sample C Male 222.7
Sample D Male 237.5
Midbrain
nTPM: 235.3
Samples: 4

Max nTPM: 362.2
Min nTPM: 174.1
Sample A Female 362.2
Sample B Female 222.3
Sample C Male 174.1
Sample D Male 182.7
Periaqueductal gray
nTPM: 207.0
Samples: 3

Max nTPM: 216.7
Min nTPM: 200.7
Sample B Female 200.7
Sample C Male 216.7
Sample D Male 203.5
Superior colliculi
nTPM: 220.6
Samples: 4

Max nTPM: 246.8
Min nTPM: 196.3
Sample A Female 246.8
Sample B Female 232.5
Sample C Male 196.3
Sample D Male 206.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 107.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 107.4
Samples: 4

Max nTPM: 110.7
Min nTPM: 105.1
Sample A Male 105.1
Sample B Male 105.7
Sample C Female 110.7
Sample D Female 108.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
68301670 Antisense, RP_041130_01_F04, Mouse strain C57BL/6J (56 days, male) 1.1

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