MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.9 nTPM
HPA Brain:27.3 nTPM
GTEx:23.9 nTPM
FANTOM5:29.4 Scaled Tags Per Million
Pig:79.1 nTPM
Mouse:24.6 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.1
2828 Female, age 72, unknown 25.7
1830 Male, age 51, unknown 24.8
1870 Female, age 42, unknown 24.3
1833 Male, age 53, unknown 24.1
2411 Female, age 72, unknown 22.9
2586 Male, age 75, left hemisphere 22.8
2019 Male, age 18, unknown 22.5
2666 Male, age 74, left hemisphere 22.4
1827 Male, age 72, unknown 22.2
2219 Male, age 76, both hemispheres 19.6
Dorsal raphe nucleus
nTPM: 21.7
2750 Male, age 76, both hemispheres 25.9
1828 Male, age 53, unknown 22.1
2047 Male, age 72, unknown 21.2
2016 Female, age 72, unknown 20.2
2298 Female, age 72, unknown 19.0
Inferior colliculus
nTPM: 22.3
1848 Female, age 42, unknown 22.9
2849 Male, age 72, unknown 22.6
1890 Male, age 53, unknown 22.4
2097 Female, age 72, unknown 21.2
Median raphe nucleus
nTPM: 20.6
2220 Male, age 76, midline 20.6
Periaquaductal grey, anterior
nTPM: 20.4
2502 Female, age 75, unknown 20.7
1947 Male, age 18, unknown 20.6
1795 Male, age 51, unknown 19.8
Periaquaductal grey, dorsal
nTPM: 20.0
2850 Male, age 76, both hemispheres 21.2
1831 Male, age 72, unknown 20.6
2464 Female, age 72, unknown 20.5
1840 Male, age 53, unknown 17.7
Periaquaductal grey, lateral
nTPM: 22.4
2053 Male, age 18, unknown 24.2
2272 Male, age 74, both hemispheres 22.7
2140 Male, age 76, both hemispheres 20.4
Pretectal area
nTPM: 22.7
2407 Male, age 75, both hemispheres 27.4
2667 Female, age 75, unknown 26.3
2316 Male, age 76, right hemisphere 25.4
1817 Female, age 42, unknown 24.3
1815 Male, age 53, unknown 22.2
2273 Male, age 74, both hemispheres 21.8
2825 Male, age 18, unknown 21.4
2224 Female, age 72, unknown 20.8
2007 Male, age 72, unknown 20.7
1816 Male, age 51, unknown 20.0
1944 Female, age 72, unknown 19.5
Red nucleus
nTPM: 27.3
1865 Male, age 51, unknown 31.6
1904 Male, age 53, unknown 29.8
2823 Male, age 76, right hemisphere 29.6
2503 Female, age 72, unknown 28.4
2227 Male, age 72, unknown 28.3
2725 Female, age 75, unknown 27.3
1954 Female, age 42, unknown 26.8
1821 Female, age 72, unknown 26.7
2769 Male, age 72, unknown 26.4
2785 Male, age 18, unknown 25.2
2584 Male, age 75, left hemisphere 23.9
2588 Male, age 74, left hemisphere 23.2
Substantia nigra
nTPM: 21.9
2583 Male, age 75, right hemisphere 24.5
2699 Male, age 18, unknown 23.7
1851 Male, age 51, unknown 23.1
2409 Female, age 72, unknown 22.6
2241 Male, age 72, unknown 21.9
1916 Female, age 42, unknown 21.8
2590 Female, age 75, unknown 21.4
1889 Female, age 72, unknown 20.8
1941 Male, age 53, unknown 20.5
2665 Male, age 74, both hemispheres 19.2
Superior colliculus
nTPM: 22.9
1913 Female, age 42, unknown 28.0
1796 Male, age 53, unknown 25.8
1895 Male, age 76, right hemisphere 24.6
1995 Male, age 72, unknown 24.6
2261 Male, age 18, unknown 22.4
1839 Male, age 51, unknown 22.1
2664 Male, age 75, both hemispheres 21.1
2087 Female, age 72, unknown 20.8
2587 Male, age 74, left hemisphere 19.8
2668 Female, age 75, unknown 19.5
Ventral tegmental area
nTPM: 22.2
2223 Female, age 72, unknown 26.7
2410 Female, age 72, unknown 25.2
2218 Male, age 76, both hemispheres 22.7
2021 Male, age 53, unknown 20.1
1942 Male, age 51, unknown 19.7
1915 Female, age 42, unknown 18.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.9
Samples: 139

Max nTPM: 49.0
Min nTPM: 15.7
Std nTPM: 5.1
Median nTPM: 22.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 49.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 38.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 37.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 37.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 37.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 36.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 32.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 32.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 31.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 31.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 31.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.4
FF:10158-103A5 76 years, female 29.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 79.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.9
Samples: 4

Max nTPM: 82.3
Min nTPM: 40.9
Sample A Female 82.3
Sample B Female 40.9
Sample C Male 58.5
Sample D Male 58.0
Midbrain
nTPM: 68.4
Samples: 4

Max nTPM: 74.0
Min nTPM: 64.0
Sample A Female 64.0
Sample B Female 68.0
Sample C Male 74.0
Sample D Male 67.7
Periaqueductal gray
nTPM: 52.2
Samples: 3

Max nTPM: 58.4
Min nTPM: 41.0
Sample B Female 58.4
Sample C Male 57.2
Sample D Male 41.0
Superior colliculi
nTPM: 79.1
Samples: 4

Max nTPM: 108.4
Min nTPM: 55.1
Sample A Female 108.4
Sample B Female 55.1
Sample C Male 83.3
Sample D Male 69.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.6
Samples: 4

Max nTPM: 28.2
Min nTPM: 20.7
Sample A Male 28.2
Sample B Male 22.5
Sample C Female 20.7
Sample D Female 27.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
556986 Antisense, RP_040825_02_G08, Mouse strain C57BL/6J (56 days, male) 0.6

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