MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70.4 nTPM
HPA Brain:27.2 nTPM
GTEx:70.4 nTPM
FANTOM5:108.2 Scaled Tags Per Million
Pig:25.7 nTPM
Mouse:85.0 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.1
1870 Female, age 42, unknown 28.2
2019 Male, age 18, unknown 25.2
2411 Female, age 72, unknown 23.9
1833 Male, age 53, unknown 22.3
1830 Male, age 51, unknown 21.2
2219 Male, age 76, both hemispheres 20.6
2828 Female, age 72, unknown 19.3
1827 Male, age 72, unknown 19.0
2666 Male, age 74, left hemisphere 11.8
2586 Male, age 75, left hemisphere 9.1
Dorsal raphe nucleus
nTPM: 25.2
2298 Female, age 72, unknown 35.7
2750 Male, age 76, both hemispheres 26.0
2016 Female, age 72, unknown 24.0
1828 Male, age 53, unknown 21.5
2047 Male, age 72, unknown 18.7
Inferior colliculus
nTPM: 23.5
2097 Female, age 72, unknown 29.2
1848 Female, age 42, unknown 23.8
1890 Male, age 53, unknown 21.3
2849 Male, age 72, unknown 19.6
Median raphe nucleus
nTPM: 27.2
2220 Male, age 76, midline 27.2
Periaquaductal grey, anterior
nTPM: 23.7
1947 Male, age 18, unknown 25.6
2502 Female, age 75, unknown 24.9
1795 Male, age 51, unknown 20.5
Periaquaductal grey, dorsal
nTPM: 23.0
2850 Male, age 76, both hemispheres 29.1
2464 Female, age 72, unknown 22.5
1840 Male, age 53, unknown 21.8
1831 Male, age 72, unknown 18.6
Periaquaductal grey, lateral
nTPM: 26.8
2272 Male, age 74, both hemispheres 34.1
2140 Male, age 76, both hemispheres 25.5
2053 Male, age 18, unknown 20.9
Pretectal area
nTPM: 23.6
2273 Male, age 74, both hemispheres 34.1
2224 Female, age 72, unknown 30.2
1815 Male, age 53, unknown 26.5
1817 Female, age 42, unknown 22.9
2667 Female, age 75, unknown 22.7
1944 Female, age 72, unknown 22.4
2007 Male, age 72, unknown 22.4
2316 Male, age 76, right hemisphere 21.7
1816 Male, age 51, unknown 20.5
2825 Male, age 18, unknown 20.1
2407 Male, age 75, both hemispheres 16.3
Red nucleus
nTPM: 24.9
1954 Female, age 42, unknown 29.9
1821 Female, age 72, unknown 29.8
1865 Male, age 51, unknown 29.7
1904 Male, age 53, unknown 28.4
2503 Female, age 72, unknown 28.4
2725 Female, age 75, unknown 28.2
2227 Male, age 72, unknown 25.3
2785 Male, age 18, unknown 24.6
2769 Male, age 72, unknown 23.8
2823 Male, age 76, right hemisphere 23.4
2588 Male, age 74, left hemisphere 15.1
2584 Male, age 75, left hemisphere 12.5
Substantia nigra
nTPM: 22.3
2241 Male, age 72, unknown 33.8
1889 Female, age 72, unknown 25.9
1851 Male, age 51, unknown 24.2
1916 Female, age 42, unknown 23.4
2699 Male, age 18, unknown 23.1
1941 Male, age 53, unknown 21.2
2665 Male, age 74, both hemispheres 20.6
2590 Female, age 75, unknown 20.4
2409 Female, age 72, unknown 17.9
2583 Male, age 75, right hemisphere 12.6
Superior colliculus
nTPM: 21.2
2587 Male, age 74, left hemisphere 26.6
1913 Female, age 42, unknown 25.9
1995 Male, age 72, unknown 25.6
1895 Male, age 76, right hemisphere 23.6
1796 Male, age 53, unknown 20.3
2087 Female, age 72, unknown 19.7
2261 Male, age 18, unknown 19.7
1839 Male, age 51, unknown 19.5
2668 Female, age 75, unknown 18.3
2664 Male, age 75, both hemispheres 12.9
Ventral tegmental area
nTPM: 24.6
2223 Female, age 72, unknown 27.9
1915 Female, age 42, unknown 26.4
2218 Male, age 76, both hemispheres 25.7
2410 Female, age 72, unknown 23.8
1942 Male, age 51, unknown 22.4
2021 Male, age 53, unknown 21.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 70.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.4
Samples: 139

Max nTPM: 144.3
Min nTPM: 41.6
Std nTPM: 19.5
Median nTPM: 66.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 144.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 135.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 128.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 122.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 113.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 113.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 112.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 106.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 104.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 104.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 98.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 108.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 108.2
FF:10158-103A5 76 years, female 108.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.0
Samples: 4

Max nTPM: 27.7
Min nTPM: 20.6
Sample A Female 27.7
Sample B Female 22.7
Sample C Male 20.6
Sample D Male 21.0
Midbrain
nTPM: 25.7
Samples: 4

Max nTPM: 29.0
Min nTPM: 23.4
Sample A Female 29.0
Sample B Female 26.7
Sample C Male 23.4
Sample D Male 23.6
Periaqueductal gray
nTPM: 20.5
Samples: 3

Max nTPM: 22.7
Min nTPM: 18.7
Sample B Female 22.7
Sample C Male 20.1
Sample D Male 18.7
Superior colliculi
nTPM: 23.6
Samples: 4

Max nTPM: 24.3
Min nTPM: 23.2
Sample A Female 23.4
Sample B Female 23.2
Sample C Male 24.3
Sample D Male 23.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 85.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.0
Samples: 4

Max nTPM: 87.5
Min nTPM: 82.5
Sample A Male 86.3
Sample B Male 83.6
Sample C Female 82.5
Sample D Female 87.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68342153 Antisense, RP_041207_02_H06, Mouse strain C57BL/6J (56 days, male) 0.3

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