MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.9 nTPM
HPA Brain:60.8 nTPM
GTEx:28.9 nTPM
FANTOM5:130.6 Scaled Tags Per Million
Mouse:9.2 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 60.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.7
1833 Male, age 53, unknown 60.4
1830 Male, age 51, unknown 60.1
1870 Female, age 42, unknown 57.0
2019 Male, age 18, unknown 45.6
2828 Female, age 72, unknown 41.7
2666 Male, age 74, left hemisphere 41.0
2411 Female, age 72, unknown 40.0
2586 Male, age 75, left hemisphere 35.5
2219 Male, age 76, both hemispheres 30.2
1827 Male, age 72, unknown 25.5
Dorsal raphe nucleus
nTPM: 32.5
2750 Male, age 76, both hemispheres 53.2
1828 Male, age 53, unknown 35.2
2016 Female, age 72, unknown 29.9
2047 Male, age 72, unknown 23.7
2298 Female, age 72, unknown 20.8
Inferior colliculus
nTPM: 29.0
2849 Male, age 72, unknown 38.1
1890 Male, age 53, unknown 32.5
1848 Female, age 42, unknown 28.1
2097 Female, age 72, unknown 17.2
Median raphe nucleus
nTPM: 45.3
2220 Male, age 76, midline 45.3
Periaquaductal grey, anterior
nTPM: 20.9
2502 Female, age 75, unknown 23.1
1947 Male, age 18, unknown 21.9
1795 Male, age 51, unknown 17.8
Periaquaductal grey, dorsal
nTPM: 26.3
2850 Male, age 76, both hemispheres 35.1
1831 Male, age 72, unknown 27.5
2464 Female, age 72, unknown 26.8
1840 Male, age 53, unknown 15.6
Periaquaductal grey, lateral
nTPM: 29.5
2272 Male, age 74, both hemispheres 33.3
2053 Male, age 18, unknown 27.9
2140 Male, age 76, both hemispheres 27.4
Pretectal area
nTPM: 26.5
2407 Male, age 75, both hemispheres 36.9
1815 Male, age 53, unknown 34.0
2825 Male, age 18, unknown 33.0
1817 Female, age 42, unknown 32.8
2316 Male, age 76, right hemisphere 30.2
2667 Female, age 75, unknown 25.9
2224 Female, age 72, unknown 23.9
2007 Male, age 72, unknown 22.7
2273 Male, age 74, both hemispheres 22.6
1944 Female, age 72, unknown 15.7
1816 Male, age 51, unknown 13.4
Red nucleus
nTPM: 60.8
1865 Male, age 51, unknown 85.8
2769 Male, age 72, unknown 72.6
1821 Female, age 72, unknown 66.5
2227 Male, age 72, unknown 65.7
1904 Male, age 53, unknown 64.9
2823 Male, age 76, right hemisphere 61.6
2503 Female, age 72, unknown 55.5
1954 Female, age 42, unknown 54.3
2785 Male, age 18, unknown 51.7
2588 Male, age 74, left hemisphere 51.5
2584 Male, age 75, left hemisphere 50.5
2725 Female, age 75, unknown 49.5
Substantia nigra
nTPM: 37.2
2699 Male, age 18, unknown 54.0
2583 Male, age 75, right hemisphere 43.6
2590 Female, age 75, unknown 42.1
2665 Male, age 74, both hemispheres 41.4
1851 Male, age 51, unknown 36.8
2409 Female, age 72, unknown 36.8
1889 Female, age 72, unknown 31.9
2241 Male, age 72, unknown 30.0
1916 Female, age 42, unknown 28.2
1941 Male, age 53, unknown 27.0
Superior colliculus
nTPM: 33.1
1913 Female, age 42, unknown 56.5
1995 Male, age 72, unknown 45.6
2587 Male, age 74, left hemisphere 42.5
1839 Male, age 51, unknown 38.4
2664 Male, age 75, both hemispheres 28.8
2668 Female, age 75, unknown 28.8
1895 Male, age 76, right hemisphere 27.9
1796 Male, age 53, unknown 26.0
2087 Female, age 72, unknown 18.9
2261 Male, age 18, unknown 17.2
Ventral tegmental area
nTPM: 42.4
2223 Female, age 72, unknown 74.3
2218 Male, age 76, both hemispheres 39.3
2021 Male, age 53, unknown 37.8
1915 Female, age 42, unknown 35.5
1942 Male, age 51, unknown 34.4
2410 Female, age 72, unknown 32.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.9
Samples: 139

Max nTPM: 68.3
Min nTPM: 7.6
Std nTPM: 13.5
Median nTPM: 25.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 68.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 65.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 63.8
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 63.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 63.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 62.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 61.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 60.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 57.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 56.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 53.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 130.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 130.6
FF:10158-103A5 76 years, female 130.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.2
Samples: 4

Max nTPM: 9.9
Min nTPM: 8.4
Sample A Male 9.9
Sample B Male 9.5
Sample C Female 8.4
Sample D Female 9.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68666864 Antisense, RP_050201_01_B04, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org