HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.0 nTPM
HPA Brain:91.0 nTPM
GTEx:35.0 nTPM
FANTOM5:298.6 Scaled Tags Per Million
Pig:78.2 nTPM
Mouse:46.3 nTPM
Allen mouse:3.9 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 91.0
Sample id Sample description nTPM
Hippocampus
nTPM: 88.0
2529 Female, age 94, left hemisphere 104.8
2621 Female, age 67, right hemisphere 94.5
1911 Female, age 85, right hemisphere 90.5
1855 Male, age 76, left hemisphere 90.1
2148 Female, age 91, left hemisphere 76.2
1898 Male, age 80, left hemisphere 72.2
Dentate gyrus
nTPM: 79.3
2530 Female, age 94, left hemisphere 110.3
2531 Female, age 67, both hemispheres 89.2
2010 Male, age 76, both hemispheres 84.2
2528 Male, age 74, both hemispheres 68.1
2246 Female, age 85, both hemispheres 66.0
1927 Female, age 91, both hemispheres 57.7
Entorhinal gyrus
nTPM: 66.7
2686 Male, age 75, right hemisphere 88.2
2117 Female, age 91, right hemisphere 71.9
1787 Male, age 76, left hemisphere 70.5
1938 Female, age 85, left hemisphere 59.7
2613 Female, age 94, left hemisphere 58.8
2764 Male, age 80, right hemisphere 51.1
Hippocampus, CA1
nTPM: 68.7
2527 Male, age 74, both hemispheres 91.3
2045 Male, age 76, both hemispheres 70.5
2749 Male, age 80, left hemisphere 61.9
1873 Female, age 85, both hemispheres 61.5
2082 Female, age 91, right hemisphere 58.4
Hippocampus, CA2
nTPM: 77.5
2437 Female, age 94, left hemisphere 101.1
1963 Male, age 80, left hemisphere 86.6
2249 Male, age 74, both hemispheres 77.9
2113 Female, age 91, right hemisphere 74.2
1892 Male, age 76, both hemispheres 62.8
1940 Female, age 85, left hemisphere 62.6
Hippocampus, CA3
nTPM: 91.0
2861 Female, age 67, both hemispheres 144.5
2436 Male, age 74, both hemispheres 105.9
1867 Male, age 76, both hemispheres 89.6
1891 Female, age 85, both hemispheres 75.1
2137 Male, age 80, left hemisphere 71.4
2620 Female, age 94, left hemisphere 59.7
Parahippocampal cortex
nTPM: 72.7
2018 Male, age 76, both hemispheres 101.7
2622 Female, age 67, right hemisphere 100.7
2692 Male, age 74, both hemispheres 79.9
2532 Female, age 72, left hemisphere 75.9
2245 Female, age 91, both hemispheres 72.7
2693 Female, age 94, both hemispheres 62.1
2250 Female, age 67, right hemisphere 60.5
1933 Female, age 85, both hemispheres 58.6
1990 Female, age 91, right hemisphere 57.9
1850 Male, age 80, both hemispheres 56.7
Perirhinal gyrus
nTPM: 56.5
1841 Female, age 85, right hemisphere 68.5
1794 Male, age 80, right hemisphere 57.6
2521 Female, age 94, right hemisphere 57.2
1847 Female, age 91, left hemisphere 51.0
2848 Male, age 76, right hemisphere 48.3
Subiculum
nTPM: 76.0
2438 Female, age 94, left hemisphere 99.2
2042 Male, age 76, both hemispheres 91.5
2619 Male, age 74, both hemispheres 83.5
2729 Female, age 91, right hemisphere 62.7
1977 Female, age 85, both hemispheres 60.1
1901 Male, age 80, both hemispheres 58.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 35.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 35.0
Samples: 197

Max nTPM: 130.9
Min nTPM: 8.7
Std nTPM: 18.4
Median nTPM: 31.9
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 130.9
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 113.1
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 104.3
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 86.6
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 85.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 74.2
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 73.3
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 71.3
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 68.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 68.1
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 67.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 298.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 298.6
FF:10169-103B7 60 years, female 329.2
FF:10153-102I9 76 years, female 268.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 78.2
Pig sample Sample description nTPM
Subiculum
nTPM: 64.6
Samples: 4

Max nTPM: 74.5
Min nTPM: 48.1
Sample A Female 74.5
Sample B Female 48.1
Sample C Male 70.3
Sample D Male 65.4
Dorsal hippocampus
nTPM: 61.6
Samples: 4

Max nTPM: 72.6
Min nTPM: 53.2
Sample A Female 67.0
Sample B Female 53.7
Sample C Male 72.6
Sample D Male 53.2
Entorhinal cortex
nTPM: 72.1
Samples: 4

Max nTPM: 82.7
Min nTPM: 64.1
Sample A Female 70.3
Sample B Female 71.3
Sample C Male 82.7
Sample D Male 64.1
Ventral hippocampus
nTPM: 78.2
Samples: 4

Max nTPM: 120.8
Min nTPM: 58.7
Sample A Female 62.8
Sample B Female 58.7
Sample C Male 120.8
Sample D Male 70.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 46.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 46.3
Samples: 4

Max nTPM: 52.1
Min nTPM: 41.7
Sample A Male 52.1
Sample B Male 41.7
Sample C Female 47.7
Sample D Female 43.6
Hippocampal formation
nTPM: 45.8
Samples: 4

Max nTPM: 46.6
Min nTPM: 43.3
Sample A Male 46.5
Sample B Male 46.6
Sample C Female 43.3
Sample D Female 46.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.9
69015278 Antisense, RP_050310_02_F06, Mouse strain C57BL/6J (56 days, male) 3.9

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