MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:95.9 nTPM
HPA Brain:66.5 nTPM
GTEx:95.9 nTPM
FANTOM5:151.5 Scaled Tags Per Million
Mouse:244.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 66.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.1
2019 Male, age 18, unknown 65.7
2411 Female, age 72, unknown 65.1
1870 Female, age 42, unknown 59.1
1827 Male, age 72, unknown 55.1
2828 Female, age 72, unknown 53.7
1833 Male, age 53, unknown 53.4
1830 Male, age 51, unknown 50.2
2219 Male, age 76, both hemispheres 49.8
2666 Male, age 74, left hemisphere 43.1
2586 Male, age 75, left hemisphere 35.3
Dorsal raphe nucleus
nTPM: 60.9
2298 Female, age 72, unknown 67.1
1828 Male, age 53, unknown 63.7
2016 Female, age 72, unknown 62.5
2750 Male, age 76, both hemispheres 57.6
2047 Male, age 72, unknown 53.4
Inferior colliculus
nTPM: 60.7
2097 Female, age 72, unknown 73.5
1890 Male, age 53, unknown 60.0
1848 Female, age 42, unknown 56.1
2849 Male, age 72, unknown 53.1
Median raphe nucleus
nTPM: 51.6
2220 Male, age 76, midline 51.6
Periaquaductal grey, anterior
nTPM: 52.6
2502 Female, age 75, unknown 58.5
1947 Male, age 18, unknown 52.4
1795 Male, age 51, unknown 46.9
Periaquaductal grey, dorsal
nTPM: 59.5
2850 Male, age 76, both hemispheres 66.6
1840 Male, age 53, unknown 59.7
2464 Female, age 72, unknown 58.4
1831 Male, age 72, unknown 53.2
Periaquaductal grey, lateral
nTPM: 60.3
2272 Male, age 74, both hemispheres 68.8
2140 Male, age 76, both hemispheres 60.4
2053 Male, age 18, unknown 51.8
Pretectal area
nTPM: 58.0
2273 Male, age 74, both hemispheres 69.8
1817 Female, age 42, unknown 64.8
2007 Male, age 72, unknown 63.9
2667 Female, age 75, unknown 62.2
2224 Female, age 72, unknown 62.1
1815 Male, age 53, unknown 59.4
1944 Female, age 72, unknown 58.6
1816 Male, age 51, unknown 58.5
2825 Male, age 18, unknown 49.8
2316 Male, age 76, right hemisphere 47.9
2407 Male, age 75, both hemispheres 40.5
Red nucleus
nTPM: 62.6
1821 Female, age 72, unknown 75.9
2503 Female, age 72, unknown 71.8
1904 Male, age 53, unknown 71.7
1954 Female, age 42, unknown 70.0
1865 Male, age 51, unknown 66.6
2823 Male, age 76, right hemisphere 65.2
2725 Female, age 75, unknown 65.1
2769 Male, age 72, unknown 62.2
2227 Male, age 72, unknown 61.2
2785 Male, age 18, unknown 60.9
2588 Male, age 74, left hemisphere 48.0
2584 Male, age 75, left hemisphere 32.8
Substantia nigra
nTPM: 66.5
1916 Female, age 42, unknown 84.4
2409 Female, age 72, unknown 77.9
1851 Male, age 51, unknown 76.8
2241 Male, age 72, unknown 71.8
2699 Male, age 18, unknown 68.8
1889 Female, age 72, unknown 64.3
1941 Male, age 53, unknown 59.9
2590 Female, age 75, unknown 59.6
2665 Male, age 74, both hemispheres 56.0
2583 Male, age 75, right hemisphere 45.4
Superior colliculus
nTPM: 52.5
2587 Male, age 74, left hemisphere 61.7
2087 Female, age 72, unknown 59.7
1995 Male, age 72, unknown 57.3
1913 Female, age 42, unknown 54.8
1895 Male, age 76, right hemisphere 54.5
2261 Male, age 18, unknown 52.7
1839 Male, age 51, unknown 52.6
1796 Male, age 53, unknown 51.2
2668 Female, age 75, unknown 44.4
2664 Male, age 75, both hemispheres 36.1
Ventral tegmental area
nTPM: 64.9
2410 Female, age 72, unknown 78.3
1915 Female, age 42, unknown 71.2
2218 Male, age 76, both hemispheres 71.1
2223 Female, age 72, unknown 57.3
1942 Male, age 51, unknown 56.9
2021 Male, age 53, unknown 54.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 95.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 95.9
Samples: 139

Max nTPM: 145.2
Min nTPM: 62.5
Std nTPM: 17.1
Median nTPM: 95.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 145.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 136.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 135.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 133.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 129.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 127.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 124.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 124.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 124.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 124.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 123.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 151.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 151.5
FF:10158-103A5 76 years, female 151.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 244.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 244.1
Samples: 4

Max nTPM: 253.0
Min nTPM: 238.8
Sample A Male 253.0
Sample B Male 244.5
Sample C Female 238.8
Sample D Female 240.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68300926 Antisense, RP_041129_02_D09, Mouse strain C57BL/6J (56 days, male) 0.1

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