HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.0 nTPM
HPA Brain:46.3 nTPM
GTEx:39.0 nTPM
FANTOM5:44.3 Scaled Tags Per Million
Pig:7.3 nTPM
Mouse:16.9 nTPM
Allen mouse:1.6 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 46.3
Sample id Sample description nTPM
Hippocampus
nTPM: 38.9
1898 Male, age 80, left hemisphere 50.3
1855 Male, age 76, left hemisphere 47.1
2148 Female, age 91, left hemisphere 38.6
2621 Female, age 67, right hemisphere 36.4
1911 Female, age 85, right hemisphere 31.4
2529 Female, age 94, left hemisphere 29.6
Dentate gyrus
nTPM: 38.1
2530 Female, age 94, left hemisphere 48.5
1927 Female, age 91, both hemispheres 45.0
2010 Male, age 76, both hemispheres 42.7
2528 Male, age 74, both hemispheres 33.4
2246 Female, age 85, both hemispheres 31.0
2531 Female, age 67, both hemispheres 28.2
Entorhinal gyrus
nTPM: 35.3
2613 Female, age 94, left hemisphere 45.7
2764 Male, age 80, right hemisphere 36.5
2686 Male, age 75, right hemisphere 33.0
1787 Male, age 76, left hemisphere 32.9
2117 Female, age 91, right hemisphere 32.7
1938 Female, age 85, left hemisphere 31.3
Hippocampus, CA1
nTPM: 46.3
2749 Male, age 80, left hemisphere 91.8
1873 Female, age 85, both hemispheres 39.3
2045 Male, age 76, both hemispheres 34.4
2527 Male, age 74, both hemispheres 33.7
2082 Female, age 91, right hemisphere 32.4
Hippocampus, CA2
nTPM: 41.0
1963 Male, age 80, left hemisphere 57.9
1892 Male, age 76, both hemispheres 52.8
2249 Male, age 74, both hemispheres 38.9
2437 Female, age 94, left hemisphere 36.0
2113 Female, age 91, right hemisphere 33.8
1940 Female, age 85, left hemisphere 26.8
Hippocampus, CA3
nTPM: 40.6
2137 Male, age 80, left hemisphere 68.5
1867 Male, age 76, both hemispheres 41.2
2436 Male, age 74, both hemispheres 39.6
2861 Female, age 67, both hemispheres 35.2
2620 Female, age 94, left hemisphere 31.1
1891 Female, age 85, both hemispheres 27.9
Parahippocampal cortex
nTPM: 29.2
1850 Male, age 80, both hemispheres 33.4
1990 Female, age 91, right hemisphere 31.5
2245 Female, age 91, both hemispheres 31.5
2018 Male, age 76, both hemispheres 30.3
1933 Female, age 85, both hemispheres 29.8
2692 Male, age 74, both hemispheres 29.1
2532 Female, age 72, left hemisphere 27.4
2250 Female, age 67, right hemisphere 27.3
2693 Female, age 94, both hemispheres 25.9
2622 Female, age 67, right hemisphere 25.7
Perirhinal gyrus
nTPM: 30.3
1847 Female, age 91, left hemisphere 37.3
1794 Male, age 80, right hemisphere 32.1
1841 Female, age 85, right hemisphere 28.2
2521 Female, age 94, right hemisphere 27.8
2848 Male, age 76, right hemisphere 25.9
Subiculum
nTPM: 34.3
1901 Male, age 80, both hemispheres 47.5
2042 Male, age 76, both hemispheres 41.9
2729 Female, age 91, right hemisphere 31.7
2438 Female, age 94, left hemisphere 29.5
1977 Female, age 85, both hemispheres 29.4
2619 Male, age 74, both hemispheres 25.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 39.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 39.0
Samples: 197

Max nTPM: 95.7
Min nTPM: 15.2
Std nTPM: 15.0
Median nTPM: 35.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 95.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 83.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 80.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 77.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 75.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 74.0
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 73.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 69.8
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 68.7
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 68.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 68.6
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 44.3
FF:10169-103B7 60 years, female 60.2
FF:10153-102I9 76 years, female 28.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 7.3
Pig sample Sample description nTPM
Subiculum
nTPM: 6.2
Samples: 4

Max nTPM: 7.3
Min nTPM: 5.3
Sample A Female 6.6
Sample B Female 5.7
Sample C Male 5.3
Sample D Male 7.3
Dorsal hippocampus
nTPM: 7.3
Samples: 4

Max nTPM: 10.7
Min nTPM: 3.0
Sample A Female 8.8
Sample B Female 6.7
Sample C Male 10.7
Sample D Male 3.0
Entorhinal cortex
nTPM: 7.2
Samples: 4

Max nTPM: 9.6
Min nTPM: 4.6
Sample A Female 9.6
Sample B Female 8.7
Sample C Male 5.7
Sample D Male 4.6
Ventral hippocampus
nTPM: 6.6
Samples: 4

Max nTPM: 9.0
Min nTPM: 4.2
Sample A Female 7.0
Sample B Female 4.2
Sample C Male 9.0
Sample D Male 6.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 16.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 15.5
Samples: 4

Max nTPM: 16.5
Min nTPM: 14.6
Sample A Male 16.5
Sample B Male 14.6
Sample C Female 15.8
Sample D Female 14.9
Hippocampal formation
nTPM: 16.9
Samples: 4

Max nTPM: 18.5
Min nTPM: 14.9
Sample A Male 14.9
Sample B Male 15.7
Sample C Female 18.5
Sample D Female 18.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.6
69817793 Antisense, RP_050510_03_G08, Mouse strain C57BL/6J (56 days, male) 1.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org