MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.0 nTPM
HPA Brain:59.3 nTPM
GTEx:8.0 nTPM
FANTOM5:4.0 Scaled Tags Per Million
Pig:19.8 nTPM
Mouse:32.6 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.2
2666 Male, age 74, left hemisphere 68.3
2586 Male, age 75, left hemisphere 59.5
2219 Male, age 76, both hemispheres 49.3
1827 Male, age 72, unknown 49.2
2411 Female, age 72, unknown 48.8
2828 Female, age 72, unknown 47.8
1870 Female, age 42, unknown 40.0
1833 Male, age 53, unknown 38.9
1830 Male, age 51, unknown 37.3
2019 Male, age 18, unknown 22.6
Dorsal raphe nucleus
nTPM: 47.1
2047 Male, age 72, unknown 55.0
2298 Female, age 72, unknown 55.0
2750 Male, age 76, both hemispheres 44.0
2016 Female, age 72, unknown 41.0
1828 Male, age 53, unknown 40.4
Inferior colliculus
nTPM: 48.0
2849 Male, age 72, unknown 63.7
1848 Female, age 42, unknown 58.8
2097 Female, age 72, unknown 38.1
1890 Male, age 53, unknown 31.1
Median raphe nucleus
nTPM: 59.3
2220 Male, age 76, midline 59.3
Periaquaductal grey, anterior
nTPM: 56.1
1947 Male, age 18, unknown 62.3
2502 Female, age 75, unknown 56.8
1795 Male, age 51, unknown 49.1
Periaquaductal grey, dorsal
nTPM: 48.8
1840 Male, age 53, unknown 56.1
2464 Female, age 72, unknown 51.0
1831 Male, age 72, unknown 45.0
2850 Male, age 76, both hemispheres 43.1
Periaquaductal grey, lateral
nTPM: 44.6
2053 Male, age 18, unknown 52.1
2140 Male, age 76, both hemispheres 46.3
2272 Male, age 74, both hemispheres 35.5
Pretectal area
nTPM: 42.2
2825 Male, age 18, unknown 68.3
2224 Female, age 72, unknown 53.0
1816 Male, age 51, unknown 51.9
2316 Male, age 76, right hemisphere 43.4
1944 Female, age 72, unknown 41.9
2667 Female, age 75, unknown 39.2
2007 Male, age 72, unknown 35.8
1817 Female, age 42, unknown 35.0
2407 Male, age 75, both hemispheres 34.0
1815 Male, age 53, unknown 32.9
2273 Male, age 74, both hemispheres 29.3
Red nucleus
nTPM: 34.0
2584 Male, age 75, left hemisphere 46.3
1954 Female, age 42, unknown 43.4
2588 Male, age 74, left hemisphere 39.3
2769 Male, age 72, unknown 36.0
2725 Female, age 75, unknown 35.4
2227 Male, age 72, unknown 35.2
2503 Female, age 72, unknown 35.0
1904 Male, age 53, unknown 32.4
1821 Female, age 72, unknown 27.0
2823 Male, age 76, right hemisphere 26.8
1865 Male, age 51, unknown 26.6
2785 Male, age 18, unknown 24.2
Substantia nigra
nTPM: 34.7
1941 Male, age 53, unknown 65.1
2665 Male, age 74, both hemispheres 46.5
1889 Female, age 72, unknown 35.5
2583 Male, age 75, right hemisphere 34.1
2590 Female, age 75, unknown 33.8
1916 Female, age 42, unknown 30.2
2699 Male, age 18, unknown 29.8
1851 Male, age 51, unknown 27.0
2241 Male, age 72, unknown 26.4
2409 Female, age 72, unknown 18.3
Superior colliculus
nTPM: 44.3
2261 Male, age 18, unknown 58.2
2664 Male, age 75, both hemispheres 55.5
1839 Male, age 51, unknown 55.2
2087 Female, age 72, unknown 47.8
1796 Male, age 53, unknown 45.5
1895 Male, age 76, right hemisphere 41.1
2668 Female, age 75, unknown 40.8
2587 Male, age 74, left hemisphere 38.3
1995 Male, age 72, unknown 32.2
1913 Female, age 42, unknown 28.2
Ventral tegmental area
nTPM: 36.2
1942 Male, age 51, unknown 45.5
2218 Male, age 76, both hemispheres 42.0
2021 Male, age 53, unknown 37.0
2223 Female, age 72, unknown 32.8
1915 Female, age 42, unknown 31.5
2410 Female, age 72, unknown 28.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.0
Samples: 139

Max nTPM: 53.8
Min nTPM: 0.8
Std nTPM: 6.6
Median nTPM: 6.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 53.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 33.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 30.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 27.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 25.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 24.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 23.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 15.3
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 13.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 13.8
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 13.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.0
FF:10158-103A5 76 years, female 4.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.1
Samples: 4

Max nTPM: 13.9
Min nTPM: 2.5
Sample A Female 13.9
Sample B Female 6.5
Sample C Male 13.3
Sample D Male 2.5
Midbrain
nTPM: 19.9
Samples: 4

Max nTPM: 37.8
Min nTPM: 2.4
Sample A Female 2.4
Sample B Female 10.4
Sample C Male 37.8
Sample D Male 28.8
Periaqueductal gray
nTPM: 15.1
Samples: 3

Max nTPM: 17.7
Min nTPM: 13.5
Sample B Female 14.0
Sample C Male 17.7
Sample D Male 13.5
Superior colliculi
nTPM: 16.2
Samples: 4

Max nTPM: 22.0
Min nTPM: 10.7
Sample A Female 17.8
Sample B Female 10.7
Sample C Male 22.0
Sample D Male 14.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.6
Samples: 4

Max nTPM: 34.0
Min nTPM: 31.4
Sample A Male 31.4
Sample B Male 32.9
Sample C Female 32.2
Sample D Female 34.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
1756 Antisense, RP_040526_02_G06, Mouse strain C57BL/6J (56 days, male) 1.7
1757 Antisense, RP_040526_02_G06, Mouse strain C57BL/6J (56 days, male) 1.2

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