MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.2 nTPM
HPA Brain:62.3 nTPM
GTEx:35.2 nTPM
FANTOM5:130.6 Scaled Tags Per Million
Pig:79.3 nTPM
Mouse:83.7 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.9
2411 Female, age 72, unknown 59.7
1870 Female, age 42, unknown 54.3
1833 Male, age 53, unknown 51.3
1830 Male, age 51, unknown 49.0
2019 Male, age 18, unknown 47.5
1827 Male, age 72, unknown 47.2
2666 Male, age 74, left hemisphere 42.9
2219 Male, age 76, both hemispheres 42.4
2828 Female, age 72, unknown 40.8
2586 Male, age 75, left hemisphere 33.9
Dorsal raphe nucleus
nTPM: 55.0
2750 Male, age 76, both hemispheres 59.7
2298 Female, age 72, unknown 59.6
2047 Male, age 72, unknown 57.0
1828 Male, age 53, unknown 51.2
2016 Female, age 72, unknown 47.3
Inferior colliculus
nTPM: 45.9
2097 Female, age 72, unknown 52.0
1848 Female, age 42, unknown 45.6
1890 Male, age 53, unknown 43.1
2849 Male, age 72, unknown 42.8
Median raphe nucleus
nTPM: 62.3
2220 Male, age 76, midline 62.3
Periaquaductal grey, anterior
nTPM: 47.4
2502 Female, age 75, unknown 50.6
1947 Male, age 18, unknown 49.6
1795 Male, age 51, unknown 41.9
Periaquaductal grey, dorsal
nTPM: 49.7
2850 Male, age 76, both hemispheres 53.5
1840 Male, age 53, unknown 49.3
2464 Female, age 72, unknown 48.3
1831 Male, age 72, unknown 47.5
Periaquaductal grey, lateral
nTPM: 46.3
2140 Male, age 76, both hemispheres 47.9
2272 Male, age 74, both hemispheres 46.1
2053 Male, age 18, unknown 44.8
Pretectal area
nTPM: 49.5
1815 Male, age 53, unknown 54.4
1944 Female, age 72, unknown 53.2
1817 Female, age 42, unknown 52.9
2224 Female, age 72, unknown 52.5
1816 Male, age 51, unknown 49.8
2273 Male, age 74, both hemispheres 49.5
2007 Male, age 72, unknown 49.3
2667 Female, age 75, unknown 49.3
2316 Male, age 76, right hemisphere 48.3
2825 Male, age 18, unknown 45.0
2407 Male, age 75, both hemispheres 40.3
Red nucleus
nTPM: 46.6
1821 Female, age 72, unknown 59.1
2823 Male, age 76, right hemisphere 52.9
1954 Female, age 42, unknown 49.0
1865 Male, age 51, unknown 48.0
2725 Female, age 75, unknown 47.9
1904 Male, age 53, unknown 47.7
2503 Female, age 72, unknown 46.5
2785 Male, age 18, unknown 44.6
2227 Male, age 72, unknown 44.4
2769 Male, age 72, unknown 43.8
2584 Male, age 75, left hemisphere 38.4
2588 Male, age 74, left hemisphere 37.3
Substantia nigra
nTPM: 57.7
1916 Female, age 42, unknown 79.2
2241 Male, age 72, unknown 71.7
1851 Male, age 51, unknown 61.0
2699 Male, age 18, unknown 58.9
1941 Male, age 53, unknown 57.7
1889 Female, age 72, unknown 56.8
2409 Female, age 72, unknown 56.2
2590 Female, age 75, unknown 50.8
2665 Male, age 74, both hemispheres 43.3
2583 Male, age 75, right hemisphere 41.7
Superior colliculus
nTPM: 46.1
2587 Male, age 74, left hemisphere 50.3
2087 Female, age 72, unknown 49.4
1895 Male, age 76, right hemisphere 48.7
2261 Male, age 18, unknown 48.2
1839 Male, age 51, unknown 48.0
1913 Female, age 42, unknown 46.9
2668 Female, age 75, unknown 46.3
1796 Male, age 53, unknown 45.5
1995 Male, age 72, unknown 42.1
2664 Male, age 75, both hemispheres 35.5
Ventral tegmental area
nTPM: 56.6
2218 Male, age 76, both hemispheres 63.7
2410 Female, age 72, unknown 63.1
1915 Female, age 42, unknown 57.2
2223 Female, age 72, unknown 53.4
1942 Male, age 51, unknown 51.2
2021 Male, age 53, unknown 50.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.2
Samples: 139

Max nTPM: 52.1
Min nTPM: 24.0
Std nTPM: 5.3
Median nTPM: 34.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 52.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 51.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 47.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 47.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 46.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 46.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 46.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 45.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 45.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 45.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 45.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 130.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 130.6
FF:10158-103A5 76 years, female 130.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 79.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 78.9
Samples: 4

Max nTPM: 96.1
Min nTPM: 60.9
Sample A Female 96.1
Sample B Female 75.0
Sample C Male 83.6
Sample D Male 60.9
Midbrain
nTPM: 79.3
Samples: 4

Max nTPM: 91.0
Min nTPM: 72.2
Sample A Female 91.0
Sample B Female 76.6
Sample C Male 77.2
Sample D Male 72.2
Periaqueductal gray
nTPM: 70.5
Samples: 3

Max nTPM: 80.7
Min nTPM: 64.0
Sample B Female 64.0
Sample C Male 80.7
Sample D Male 66.7
Superior colliculi
nTPM: 76.9
Samples: 4

Max nTPM: 84.1
Min nTPM: 68.7
Sample A Female 84.1
Sample B Female 68.7
Sample C Male 80.7
Sample D Male 73.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 83.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 83.7
Samples: 4

Max nTPM: 86.5
Min nTPM: 79.3
Sample A Male 79.3
Sample B Male 86.5
Sample C Female 84.4
Sample D Female 84.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
68342264 Antisense, RP_041214_01_A09, Mouse strain C57BL/6J (56 days, male) 2.7

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