MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.3 nTPM
HPA Brain:8.4 nTPM
GTEx:38.3 nTPM
FANTOM5:93.8 Scaled Tags Per Million
Pig:68.5 nTPM
Mouse:36.0 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.3
1870 Female, age 42, unknown 9.0
2666 Male, age 74, left hemisphere 8.4
1833 Male, age 53, unknown 7.6
2019 Male, age 18, unknown 7.6
2586 Male, age 75, left hemisphere 7.4
1830 Male, age 51, unknown 7.1
1827 Male, age 72, unknown 7.0
2411 Female, age 72, unknown 6.7
2219 Male, age 76, both hemispheres 6.3
2828 Female, age 72, unknown 6.2
Dorsal raphe nucleus
nTPM: 7.2
2298 Female, age 72, unknown 11.6
1828 Male, age 53, unknown 8.0
2750 Male, age 76, both hemispheres 6.3
2047 Male, age 72, unknown 5.8
2016 Female, age 72, unknown 4.4
Inferior colliculus
nTPM: 7.1
2849 Male, age 72, unknown 10.5
1890 Male, age 53, unknown 6.4
2097 Female, age 72, unknown 6.1
1848 Female, age 42, unknown 5.5
Median raphe nucleus
nTPM: 8.0
2220 Male, age 76, midline 8.0
Periaquaductal grey, anterior
nTPM: 4.8
1795 Male, age 51, unknown 5.7
1947 Male, age 18, unknown 5.1
2502 Female, age 75, unknown 3.6
Periaquaductal grey, dorsal
nTPM: 6.9
2850 Male, age 76, both hemispheres 9.1
1831 Male, age 72, unknown 7.1
2464 Female, age 72, unknown 6.3
1840 Male, age 53, unknown 5.1
Periaquaductal grey, lateral
nTPM: 6.3
2272 Male, age 74, both hemispheres 8.4
2053 Male, age 18, unknown 5.3
2140 Male, age 76, both hemispheres 5.3
Pretectal area
nTPM: 6.9
2273 Male, age 74, both hemispheres 11.2
1817 Female, age 42, unknown 9.9
2224 Female, age 72, unknown 9.5
2667 Female, age 75, unknown 6.6
2007 Male, age 72, unknown 6.4
1944 Female, age 72, unknown 6.3
2825 Male, age 18, unknown 5.9
1815 Male, age 53, unknown 5.8
1816 Male, age 51, unknown 5.4
2316 Male, age 76, right hemisphere 4.9
2407 Male, age 75, both hemispheres 4.5
Red nucleus
nTPM: 8.4
1904 Male, age 53, unknown 12.1
2769 Male, age 72, unknown 10.9
2503 Female, age 72, unknown 10.3
2725 Female, age 75, unknown 10.1
2823 Male, age 76, right hemisphere 9.9
1865 Male, age 51, unknown 9.8
1821 Female, age 72, unknown 8.1
2785 Male, age 18, unknown 7.9
2227 Male, age 72, unknown 7.8
2588 Male, age 74, left hemisphere 5.4
1954 Female, age 42, unknown 4.8
2584 Male, age 75, left hemisphere 4.2
Substantia nigra
nTPM: 7.4
1916 Female, age 42, unknown 9.7
2699 Male, age 18, unknown 9.7
1851 Male, age 51, unknown 8.8
1889 Female, age 72, unknown 8.7
1941 Male, age 53, unknown 8.7
2409 Female, age 72, unknown 7.1
2590 Female, age 75, unknown 6.4
2665 Male, age 74, both hemispheres 5.7
2583 Male, age 75, right hemisphere 4.9
2241 Male, age 72, unknown 4.6
Superior colliculus
nTPM: 7.3
2587 Male, age 74, left hemisphere 11.9
1913 Female, age 42, unknown 9.5
2668 Female, age 75, unknown 8.2
1839 Male, age 51, unknown 7.4
1995 Male, age 72, unknown 6.8
1796 Male, age 53, unknown 6.7
2087 Female, age 72, unknown 6.7
2261 Male, age 18, unknown 6.3
1895 Male, age 76, right hemisphere 5.1
2664 Male, age 75, both hemispheres 4.4
Ventral tegmental area
nTPM: 8.4
2218 Male, age 76, both hemispheres 11.6
2223 Female, age 72, unknown 10.2
2410 Female, age 72, unknown 9.1
1915 Female, age 42, unknown 7.7
2021 Male, age 53, unknown 6.3
1942 Male, age 51, unknown 5.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.3
Samples: 139

Max nTPM: 66.2
Min nTPM: 19.4
Std nTPM: 8.7
Median nTPM: 38.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 66.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 64.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 59.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 57.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 54.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 53.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 52.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 51.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 51.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 50.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 50.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.8
FF:10158-103A5 76 years, female 93.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 68.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 66.7
Samples: 4

Max nTPM: 80.6
Min nTPM: 53.4
Sample A Female 80.6
Sample B Female 53.4
Sample C Male 70.9
Sample D Male 62.0
Midbrain
nTPM: 66.9
Samples: 4

Max nTPM: 86.6
Min nTPM: 56.1
Sample A Female 86.6
Sample B Female 56.1
Sample C Male 65.7
Sample D Male 59.0
Periaqueductal gray
nTPM: 53.4
Samples: 3

Max nTPM: 61.4
Min nTPM: 49.0
Sample B Female 49.0
Sample C Male 61.4
Sample D Male 49.8
Superior colliculi
nTPM: 68.5
Samples: 4

Max nTPM: 82.6
Min nTPM: 53.3
Sample A Female 82.6
Sample B Female 53.3
Sample C Male 69.5
Sample D Male 68.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.0
Samples: 4

Max nTPM: 40.5
Min nTPM: 33.2
Sample A Male 40.5
Sample B Male 33.2
Sample C Female 33.2
Sample D Female 37.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
75695653 Antisense, RP_060518_04_C04, Mouse strain C57BL/6J (56 days, male) 2.2

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