MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.7 nTPM
HPA Brain:232.8 nTPM
GTEx:52.7 nTPM
FANTOM5:305.2 Scaled Tags Per Million
Pig:233.2 nTPM
Mouse:155.1 nTPM
Allen mouse:14.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 232.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 177.8
2411 Female, age 72, unknown 218.7
2666 Male, age 74, left hemisphere 206.1
2219 Male, age 76, both hemispheres 195.6
1870 Female, age 42, unknown 181.6
1827 Male, age 72, unknown 175.3
1833 Male, age 53, unknown 172.6
2019 Male, age 18, unknown 163.8
1830 Male, age 51, unknown 158.8
2586 Male, age 75, left hemisphere 155.0
2828 Female, age 72, unknown 151.0
Dorsal raphe nucleus
nTPM: 165.3
2750 Male, age 76, both hemispheres 226.1
2298 Female, age 72, unknown 170.3
2047 Male, age 72, unknown 164.1
1828 Male, age 53, unknown 146.0
2016 Female, age 72, unknown 120.0
Inferior colliculus
nTPM: 140.3
2097 Female, age 72, unknown 155.2
1848 Female, age 42, unknown 138.4
1890 Male, age 53, unknown 134.3
2849 Male, age 72, unknown 133.3
Median raphe nucleus
nTPM: 209.9
2220 Male, age 76, midline 209.9
Periaquaductal grey, anterior
nTPM: 157.0
1947 Male, age 18, unknown 177.6
1795 Male, age 51, unknown 150.4
2502 Female, age 75, unknown 142.9
Periaquaductal grey, dorsal
nTPM: 126.5
2464 Female, age 72, unknown 138.9
1831 Male, age 72, unknown 130.0
1840 Male, age 53, unknown 126.0
2850 Male, age 76, both hemispheres 111.1
Periaquaductal grey, lateral
nTPM: 115.0
2053 Male, age 18, unknown 136.5
2272 Male, age 74, both hemispheres 111.1
2140 Male, age 76, both hemispheres 97.5
Pretectal area
nTPM: 161.6
2007 Male, age 72, unknown 210.1
1815 Male, age 53, unknown 206.1
1816 Male, age 51, unknown 206.0
1944 Female, age 72, unknown 198.2
1817 Female, age 42, unknown 197.0
2224 Female, age 72, unknown 155.3
2825 Male, age 18, unknown 141.3
2667 Female, age 75, unknown 129.3
2316 Male, age 76, right hemisphere 125.3
2407 Male, age 75, both hemispheres 117.8
2273 Male, age 74, both hemispheres 91.7
Red nucleus
nTPM: 177.4
2725 Female, age 75, unknown 220.7
1821 Female, age 72, unknown 206.3
2588 Male, age 74, left hemisphere 202.1
2503 Female, age 72, unknown 190.0
1904 Male, age 53, unknown 176.6
1865 Male, age 51, unknown 173.4
2823 Male, age 76, right hemisphere 171.6
2584 Male, age 75, left hemisphere 170.1
2785 Male, age 18, unknown 163.8
1954 Female, age 42, unknown 157.3
2769 Male, age 72, unknown 149.8
2227 Male, age 72, unknown 147.3
Substantia nigra
nTPM: 232.8
1916 Female, age 42, unknown 328.1
2241 Male, age 72, unknown 282.5
1851 Male, age 51, unknown 279.4
2409 Female, age 72, unknown 255.6
1941 Male, age 53, unknown 250.0
1889 Female, age 72, unknown 225.8
2699 Male, age 18, unknown 205.3
2583 Male, age 75, right hemisphere 180.9
2665 Male, age 74, both hemispheres 167.5
2590 Female, age 75, unknown 153.2
Superior colliculus
nTPM: 161.7
2668 Female, age 75, unknown 244.4
1895 Male, age 76, right hemisphere 176.2
1796 Male, age 53, unknown 174.5
2587 Male, age 74, left hemisphere 169.4
2087 Female, age 72, unknown 167.6
2261 Male, age 18, unknown 163.0
1913 Female, age 42, unknown 161.0
1839 Male, age 51, unknown 143.1
1995 Male, age 72, unknown 132.9
2664 Male, age 75, both hemispheres 85.2
Ventral tegmental area
nTPM: 214.0
2410 Female, age 72, unknown 290.2
2218 Male, age 76, both hemispheres 259.9
1915 Female, age 42, unknown 229.0
2223 Female, age 72, unknown 188.8
1942 Male, age 51, unknown 164.7
2021 Male, age 53, unknown 151.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.7
Samples: 139

Max nTPM: 155.7
Min nTPM: 12.7
Std nTPM: 28.8
Median nTPM: 45.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 155.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 142.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 141.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 117.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 114.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 113.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 110.5
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 107.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 106.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 102.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 101.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 305.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 305.2
FF:10158-103A5 76 years, female 305.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 233.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 228.1
Samples: 4

Max nTPM: 328.3
Min nTPM: 147.6
Sample A Female 284.8
Sample B Female 151.7
Sample C Male 328.3
Sample D Male 147.6
Midbrain
nTPM: 233.2
Samples: 4

Max nTPM: 338.1
Min nTPM: 184.7
Sample A Female 211.2
Sample B Female 184.7
Sample C Male 338.1
Sample D Male 198.7
Periaqueductal gray
nTPM: 143.8
Samples: 3

Max nTPM: 166.0
Min nTPM: 123.2
Sample B Female 142.2
Sample C Male 166.0
Sample D Male 123.2
Superior colliculi
nTPM: 208.0
Samples: 4

Max nTPM: 303.2
Min nTPM: 119.4
Sample A Female 188.8
Sample B Female 119.4
Sample C Male 303.2
Sample D Male 220.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 155.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 155.1
Samples: 4

Max nTPM: 159.6
Min nTPM: 148.1
Sample A Male 148.1
Sample B Male 159.6
Sample C Female 158.2
Sample D Female 154.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.2
71358627 Antisense, RP_050725_03_F05, Mouse strain C57BL/6J (56 days, male) 15.3
68844642 Antisense, RP_050222_02_B03, Mouse strain C57BL/6J (56 days, male) 13.2

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