MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:75.0 nTPM
HPA Brain:323.8 nTPM
GTEx:75.0 nTPM
FANTOM5:263.8 Scaled Tags Per Million
Pig:79.4 nTPM
Mouse:63.0 nTPM
Allen mouse:16.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 323.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 317.9
2666 Male, age 74, left hemisphere 389.2
2586 Male, age 75, left hemisphere 364.9
2828 Female, age 72, unknown 334.1
1833 Male, age 53, unknown 333.4
1830 Male, age 51, unknown 321.7
1827 Male, age 72, unknown 313.5
1870 Female, age 42, unknown 296.2
2219 Male, age 76, both hemispheres 278.3
2411 Female, age 72, unknown 276.3
2019 Male, age 18, unknown 271.5
Dorsal raphe nucleus
nTPM: 237.1
2750 Male, age 76, both hemispheres 308.9
1828 Male, age 53, unknown 266.0
2047 Male, age 72, unknown 226.8
2016 Female, age 72, unknown 199.6
2298 Female, age 72, unknown 184.1
Inferior colliculus
nTPM: 242.5
2849 Male, age 72, unknown 306.9
1890 Male, age 53, unknown 241.6
1848 Female, age 42, unknown 213.2
2097 Female, age 72, unknown 208.3
Median raphe nucleus
nTPM: 268.9
2220 Male, age 76, midline 268.9
Periaquaductal grey, anterior
nTPM: 267.6
1947 Male, age 18, unknown 278.4
1795 Male, age 51, unknown 269.0
2502 Female, age 75, unknown 255.4
Periaquaductal grey, dorsal
nTPM: 213.3
2464 Female, age 72, unknown 232.7
2850 Male, age 76, both hemispheres 232.2
1831 Male, age 72, unknown 232.1
1840 Male, age 53, unknown 156.3
Periaquaductal grey, lateral
nTPM: 195.9
2272 Male, age 74, both hemispheres 209.4
2053 Male, age 18, unknown 194.7
2140 Male, age 76, both hemispheres 183.5
Pretectal area
nTPM: 258.8
2667 Female, age 75, unknown 346.1
1815 Male, age 53, unknown 308.9
2407 Male, age 75, both hemispheres 298.1
1817 Female, age 42, unknown 277.8
2825 Male, age 18, unknown 271.3
1816 Male, age 51, unknown 266.5
2007 Male, age 72, unknown 264.9
1944 Female, age 72, unknown 244.2
2316 Male, age 76, right hemisphere 202.6
2224 Female, age 72, unknown 186.8
2273 Male, age 74, both hemispheres 179.5
Red nucleus
nTPM: 323.8
2584 Male, age 75, left hemisphere 404.1
2769 Male, age 72, unknown 346.7
2588 Male, age 74, left hemisphere 343.9
2823 Male, age 76, right hemisphere 337.9
2227 Male, age 72, unknown 330.6
1821 Female, age 72, unknown 320.5
1865 Male, age 51, unknown 314.2
1904 Male, age 53, unknown 311.5
2785 Male, age 18, unknown 304.3
2503 Female, age 72, unknown 294.8
1954 Female, age 42, unknown 289.1
2725 Female, age 75, unknown 288.0
Substantia nigra
nTPM: 282.6
2583 Male, age 75, right hemisphere 344.8
1916 Female, age 42, unknown 344.7
2699 Male, age 18, unknown 339.0
2665 Male, age 74, both hemispheres 337.7
1941 Male, age 53, unknown 313.0
1851 Male, age 51, unknown 304.3
1889 Female, age 72, unknown 255.1
2590 Female, age 75, unknown 225.0
2409 Female, age 72, unknown 193.5
2241 Male, age 72, unknown 168.9
Superior colliculus
nTPM: 270.9
2664 Male, age 75, both hemispheres 321.5
1913 Female, age 42, unknown 316.9
2668 Female, age 75, unknown 282.6
1995 Male, age 72, unknown 278.6
2587 Male, age 74, left hemisphere 270.2
1839 Male, age 51, unknown 268.1
1796 Male, age 53, unknown 256.3
1895 Male, age 76, right hemisphere 242.8
2261 Male, age 18, unknown 242.8
2087 Female, age 72, unknown 229.4
Ventral tegmental area
nTPM: 267.3
2223 Female, age 72, unknown 325.9
2218 Male, age 76, both hemispheres 292.9
1915 Female, age 42, unknown 276.9
2410 Female, age 72, unknown 248.6
2021 Male, age 53, unknown 229.9
1942 Male, age 51, unknown 229.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 75.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 75.0
Samples: 139

Max nTPM: 191.7
Min nTPM: 27.8
Std nTPM: 29.0
Median nTPM: 66.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 191.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 188.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 155.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 142.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 141.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 141.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 131.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 129.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 128.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 125.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 125.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 263.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 263.8
FF:10158-103A5 76 years, female 263.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 79.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 70.0
Samples: 4

Max nTPM: 78.6
Min nTPM: 49.9
Sample A Female 78.6
Sample B Female 49.9
Sample C Male 77.2
Sample D Male 74.3
Midbrain
nTPM: 79.4
Samples: 4

Max nTPM: 109.5
Min nTPM: 58.8
Sample A Female 109.5
Sample B Female 58.8
Sample C Male 79.6
Sample D Male 69.6
Periaqueductal gray
nTPM: 55.2
Samples: 3

Max nTPM: 60.0
Min nTPM: 51.3
Sample B Female 54.2
Sample C Male 60.0
Sample D Male 51.3
Superior colliculi
nTPM: 73.9
Samples: 4

Max nTPM: 81.3
Min nTPM: 54.4
Sample A Female 78.9
Sample B Female 54.4
Sample C Male 80.9
Sample D Male 81.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 63.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 63.0
Samples: 4

Max nTPM: 68.3
Min nTPM: 58.7
Sample A Male 68.3
Sample B Male 58.7
Sample C Female 61.7
Sample D Female 63.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.3
70429166 Antisense, RP_050614_01_B06, Mouse strain C57BL/6J (56 days, male) 16.3

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