MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.6 nTPM
HPA Brain:31.8 nTPM
GTEx:11.6 nTPM
FANTOM5:19.1 Scaled Tags Per Million
Pig:24.8 nTPM
Mouse:46.0 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.8
2666 Male, age 74, left hemisphere 36.7
1827 Male, age 72, unknown 32.7
2219 Male, age 76, both hemispheres 28.1
2411 Female, age 72, unknown 22.0
1833 Male, age 53, unknown 21.0
2828 Female, age 72, unknown 21.0
2586 Male, age 75, left hemisphere 20.5
1830 Male, age 51, unknown 19.3
1870 Female, age 42, unknown 19.2
2019 Male, age 18, unknown 17.5
Dorsal raphe nucleus
nTPM: 21.8
2298 Female, age 72, unknown 24.3
1828 Male, age 53, unknown 22.8
2047 Male, age 72, unknown 21.7
2750 Male, age 76, both hemispheres 21.4
2016 Female, age 72, unknown 19.1
Inferior colliculus
nTPM: 31.8
2097 Female, age 72, unknown 36.8
2849 Male, age 72, unknown 33.1
1848 Female, age 42, unknown 32.7
1890 Male, age 53, unknown 24.7
Median raphe nucleus
nTPM: 20.1
2220 Male, age 76, midline 20.1
Periaquaductal grey, anterior
nTPM: 27.6
1947 Male, age 18, unknown 31.7
1795 Male, age 51, unknown 26.8
2502 Female, age 75, unknown 24.1
Periaquaductal grey, dorsal
nTPM: 22.5
1840 Male, age 53, unknown 27.1
1831 Male, age 72, unknown 24.9
2464 Female, age 72, unknown 22.7
2850 Male, age 76, both hemispheres 15.3
Periaquaductal grey, lateral
nTPM: 18.8
2053 Male, age 18, unknown 25.6
2140 Male, age 76, both hemispheres 16.2
2272 Male, age 74, both hemispheres 14.6
Pretectal area
nTPM: 21.7
1817 Female, age 42, unknown 29.2
2007 Male, age 72, unknown 28.0
1816 Male, age 51, unknown 26.1
2825 Male, age 18, unknown 25.1
2224 Female, age 72, unknown 23.3
1815 Male, age 53, unknown 21.8
2316 Male, age 76, right hemisphere 21.4
1944 Female, age 72, unknown 21.1
2667 Female, age 75, unknown 19.1
2407 Male, age 75, both hemispheres 13.5
2273 Male, age 74, both hemispheres 10.3
Red nucleus
nTPM: 19.6
2588 Male, age 74, left hemisphere 25.3
2823 Male, age 76, right hemisphere 24.2
2725 Female, age 75, unknown 24.0
1821 Female, age 72, unknown 23.5
2584 Male, age 75, left hemisphere 20.8
2503 Female, age 72, unknown 18.5
2769 Male, age 72, unknown 18.5
2227 Male, age 72, unknown 16.9
1954 Female, age 42, unknown 16.6
1865 Male, age 51, unknown 16.3
2785 Male, age 18, unknown 15.7
1904 Male, age 53, unknown 14.7
Substantia nigra
nTPM: 25.7
2665 Male, age 74, both hemispheres 38.2
1916 Female, age 42, unknown 32.5
1941 Male, age 53, unknown 31.5
1889 Female, age 72, unknown 26.0
2409 Female, age 72, unknown 24.7
1851 Male, age 51, unknown 23.8
2241 Male, age 72, unknown 21.7
2699 Male, age 18, unknown 20.2
2590 Female, age 75, unknown 20.0
2583 Male, age 75, right hemisphere 18.3
Superior colliculus
nTPM: 21.3
1895 Male, age 76, right hemisphere 30.3
1839 Male, age 51, unknown 28.4
1796 Male, age 53, unknown 26.1
2668 Female, age 75, unknown 25.5
2087 Female, age 72, unknown 22.7
2587 Male, age 74, left hemisphere 21.0
2261 Male, age 18, unknown 20.8
2664 Male, age 75, both hemispheres 13.4
1913 Female, age 42, unknown 13.0
1995 Male, age 72, unknown 12.3
Ventral tegmental area
nTPM: 22.1
2218 Male, age 76, both hemispheres 26.0
1915 Female, age 42, unknown 25.2
2410 Female, age 72, unknown 23.1
2223 Female, age 72, unknown 20.7
1942 Male, age 51, unknown 19.1
2021 Male, age 53, unknown 18.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.6
Samples: 139

Max nTPM: 46.8
Min nTPM: 3.2
Std nTPM: 5.7
Median nTPM: 10.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 46.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 24.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 24.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 23.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 23.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 22.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 21.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 21.6
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 21.4
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 20.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 19.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.1
FF:10158-103A5 76 years, female 19.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.8
Samples: 4

Max nTPM: 33.8
Min nTPM: 18.3
Sample A Female 33.8
Sample B Female 18.3
Sample C Male 27.5
Sample D Male 19.7
Midbrain
nTPM: 20.3
Samples: 4

Max nTPM: 22.9
Min nTPM: 18.1
Sample A Female 21.1
Sample B Female 18.1
Sample C Male 19.1
Sample D Male 22.9
Periaqueductal gray
nTPM: 18.3
Samples: 3

Max nTPM: 18.9
Min nTPM: 17.6
Sample B Female 17.6
Sample C Male 18.9
Sample D Male 18.4
Superior colliculi
nTPM: 21.6
Samples: 4

Max nTPM: 26.6
Min nTPM: 12.8
Sample A Female 24.3
Sample B Female 12.8
Sample C Male 22.7
Sample D Male 26.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.0
Samples: 4

Max nTPM: 48.2
Min nTPM: 42.6
Sample A Male 42.6
Sample B Male 48.2
Sample C Female 47.8
Sample D Female 45.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
74583163 Antisense, RP_051214_02_F11, Mouse strain C57BL/6J (56 days, male) 1.1
68843805 Antisense, RP_050217_02_C09, Mouse strain C57BL/6J (56 days, male) 0.9

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