MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.5 nTPM
HPA Brain:41.6 nTPM
GTEx:16.5 nTPM
FANTOM5:34.0 Scaled Tags Per Million
Pig:24.3 nTPM
Mouse:11.3 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.5
2666 Male, age 74, left hemisphere 40.2
2411 Female, age 72, unknown 35.9
1870 Female, age 42, unknown 34.3
1830 Male, age 51, unknown 32.5
1833 Male, age 53, unknown 32.0
1827 Male, age 72, unknown 31.4
2019 Male, age 18, unknown 31.2
2828 Female, age 72, unknown 30.9
2219 Male, age 76, both hemispheres 29.1
2586 Male, age 75, left hemisphere 27.8
Dorsal raphe nucleus
nTPM: 33.9
2047 Male, age 72, unknown 35.5
2298 Female, age 72, unknown 34.5
1828 Male, age 53, unknown 34.1
2750 Male, age 76, both hemispheres 33.8
2016 Female, age 72, unknown 31.6
Inferior colliculus
nTPM: 35.5
2097 Female, age 72, unknown 41.5
1848 Female, age 42, unknown 33.8
2849 Male, age 72, unknown 33.7
1890 Male, age 53, unknown 33.2
Median raphe nucleus
nTPM: 41.6
2220 Male, age 76, midline 41.6
Periaquaductal grey, anterior
nTPM: 34.0
2502 Female, age 75, unknown 36.2
1947 Male, age 18, unknown 35.6
1795 Male, age 51, unknown 30.2
Periaquaductal grey, dorsal
nTPM: 32.6
1840 Male, age 53, unknown 34.7
2464 Female, age 72, unknown 34.1
2850 Male, age 76, both hemispheres 31.8
1831 Male, age 72, unknown 29.7
Periaquaductal grey, lateral
nTPM: 31.3
2053 Male, age 18, unknown 32.2
2272 Male, age 74, both hemispheres 31.3
2140 Male, age 76, both hemispheres 30.4
Pretectal area
nTPM: 32.0
1817 Female, age 42, unknown 38.2
2007 Male, age 72, unknown 37.7
1944 Female, age 72, unknown 34.9
1816 Male, age 51, unknown 34.7
2825 Male, age 18, unknown 33.7
2224 Female, age 72, unknown 33.5
1815 Male, age 53, unknown 32.6
2316 Male, age 76, right hemisphere 29.7
2667 Female, age 75, unknown 28.2
2273 Male, age 74, both hemispheres 27.6
2407 Male, age 75, both hemispheres 21.0
Red nucleus
nTPM: 32.8
2588 Male, age 74, left hemisphere 38.4
1954 Female, age 42, unknown 37.2
1821 Female, age 72, unknown 35.4
2503 Female, age 72, unknown 33.0
2785 Male, age 18, unknown 32.9
1904 Male, age 53, unknown 32.5
1865 Male, age 51, unknown 32.1
2227 Male, age 72, unknown 32.0
2769 Male, age 72, unknown 32.0
2725 Female, age 75, unknown 30.8
2584 Male, age 75, left hemisphere 30.3
2823 Male, age 76, right hemisphere 27.4
Substantia nigra
nTPM: 31.8
2665 Male, age 74, both hemispheres 44.3
2241 Male, age 72, unknown 36.8
1889 Female, age 72, unknown 35.6
1916 Female, age 42, unknown 31.3
1941 Male, age 53, unknown 31.0
2590 Female, age 75, unknown 30.2
1851 Male, age 51, unknown 29.4
2409 Female, age 72, unknown 28.9
2583 Male, age 75, right hemisphere 26.7
2699 Male, age 18, unknown 23.5
Superior colliculus
nTPM: 30.8
2261 Male, age 18, unknown 36.4
2587 Male, age 74, left hemisphere 35.9
2668 Female, age 75, unknown 35.3
2087 Female, age 72, unknown 33.7
1839 Male, age 51, unknown 32.6
1796 Male, age 53, unknown 29.2
1895 Male, age 76, right hemisphere 28.8
1913 Female, age 42, unknown 26.7
1995 Male, age 72, unknown 25.7
2664 Male, age 75, both hemispheres 23.9
Ventral tegmental area
nTPM: 30.7
1942 Male, age 51, unknown 31.7
2021 Male, age 53, unknown 31.6
2410 Female, age 72, unknown 31.3
2223 Female, age 72, unknown 31.1
2218 Male, age 76, both hemispheres 30.0
1915 Female, age 42, unknown 28.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.5
Samples: 139

Max nTPM: 38.6
Min nTPM: 8.9
Std nTPM: 4.6
Median nTPM: 15.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 38.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 34.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 30.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 28.7
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 26.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 26.2
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 26.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 25.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 23.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 22.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 22.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.0
FF:10158-103A5 76 years, female 34.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.8
Samples: 4

Max nTPM: 26.0
Min nTPM: 18.9
Sample A Female 26.0
Sample B Female 22.5
Sample C Male 19.9
Sample D Male 18.9
Midbrain
nTPM: 20.5
Samples: 4

Max nTPM: 24.8
Min nTPM: 15.7
Sample A Female 24.8
Sample B Female 15.7
Sample C Male 23.0
Sample D Male 18.6
Periaqueductal gray
nTPM: 15.9
Samples: 3

Max nTPM: 17.4
Min nTPM: 14.5
Sample B Female 15.7
Sample C Male 17.4
Sample D Male 14.5
Superior colliculi
nTPM: 24.3
Samples: 4

Max nTPM: 27.6
Min nTPM: 20.4
Sample A Female 27.6
Sample B Female 26.3
Sample C Male 22.9
Sample D Male 20.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.4
Samples: 4

Max nTPM: 12.0
Min nTPM: 10.1
Sample A Male 10.1
Sample B Male 12.0
Sample C Female 11.6
Sample D Female 11.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
71213707 Antisense, RP_050816_04_E02, Mouse strain C57BL/6J (56 days, male) 2.8

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