MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:97.7 nTPM
HPA Brain:95.4 nTPM
GTEx:97.7 nTPM
FANTOM5:23.2 Scaled Tags Per Million
Pig:166.4 nTPM
Mouse:109.3 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 95.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.2
2411 Female, age 72, unknown 101.6
1870 Female, age 42, unknown 96.5
2019 Male, age 18, unknown 90.9
1833 Male, age 53, unknown 89.6
1827 Male, age 72, unknown 85.5
1830 Male, age 51, unknown 83.0
2219 Male, age 76, both hemispheres 82.7
2828 Female, age 72, unknown 76.6
2666 Male, age 74, left hemisphere 76.3
2586 Male, age 75, left hemisphere 69.7
Dorsal raphe nucleus
nTPM: 95.4
2298 Female, age 72, unknown 104.3
1828 Male, age 53, unknown 102.9
2047 Male, age 72, unknown 92.3
2016 Female, age 72, unknown 90.8
2750 Male, age 76, both hemispheres 86.7
Inferior colliculus
nTPM: 88.5
2097 Female, age 72, unknown 95.6
1890 Male, age 53, unknown 91.2
1848 Female, age 42, unknown 86.9
2849 Male, age 72, unknown 80.5
Median raphe nucleus
nTPM: 91.4
2220 Male, age 76, midline 91.4
Periaquaductal grey, anterior
nTPM: 81.3
1947 Male, age 18, unknown 84.9
2502 Female, age 75, unknown 80.9
1795 Male, age 51, unknown 78.0
Periaquaductal grey, dorsal
nTPM: 85.9
2850 Male, age 76, both hemispheres 102.2
1840 Male, age 53, unknown 84.0
2464 Female, age 72, unknown 80.2
1831 Male, age 72, unknown 77.0
Periaquaductal grey, lateral
nTPM: 81.1
2140 Male, age 76, both hemispheres 82.4
2053 Male, age 18, unknown 82.1
2272 Male, age 74, both hemispheres 78.9
Pretectal area
nTPM: 84.1
2224 Female, age 72, unknown 93.9
1817 Female, age 42, unknown 92.6
1815 Male, age 53, unknown 90.7
1816 Male, age 51, unknown 90.6
2273 Male, age 74, both hemispheres 90.1
2667 Female, age 75, unknown 88.9
2007 Male, age 72, unknown 83.9
2825 Male, age 18, unknown 81.2
2316 Male, age 76, right hemisphere 79.6
1944 Female, age 72, unknown 76.8
2407 Male, age 75, both hemispheres 57.4
Red nucleus
nTPM: 89.3
1821 Female, age 72, unknown 122.4
2725 Female, age 75, unknown 99.5
1954 Female, age 42, unknown 94.9
2823 Male, age 76, right hemisphere 93.6
1904 Male, age 53, unknown 92.9
1865 Male, age 51, unknown 92.2
2503 Female, age 72, unknown 90.7
2769 Male, age 72, unknown 90.2
2227 Male, age 72, unknown 88.2
2785 Male, age 18, unknown 83.7
2588 Male, age 74, left hemisphere 66.3
2584 Male, age 75, left hemisphere 57.4
Substantia nigra
nTPM: 93.5
1916 Female, age 42, unknown 112.8
1851 Male, age 51, unknown 104.3
2409 Female, age 72, unknown 102.2
2241 Male, age 72, unknown 99.0
2699 Male, age 18, unknown 95.1
1889 Female, age 72, unknown 91.1
2665 Male, age 74, both hemispheres 89.2
1941 Male, age 53, unknown 84.3
2590 Female, age 75, unknown 81.7
2583 Male, age 75, right hemisphere 75.4
Superior colliculus
nTPM: 81.7
1895 Male, age 76, right hemisphere 95.4
1913 Female, age 42, unknown 95.2
2587 Male, age 74, left hemisphere 94.2
1995 Male, age 72, unknown 91.3
2668 Female, age 75, unknown 76.5
1796 Male, age 53, unknown 76.3
2087 Female, age 72, unknown 76.2
1839 Male, age 51, unknown 75.8
2261 Male, age 18, unknown 75.2
2664 Male, age 75, both hemispheres 60.5
Ventral tegmental area
nTPM: 92.2
2410 Female, age 72, unknown 104.3
2218 Male, age 76, both hemispheres 97.2
1915 Female, age 42, unknown 96.0
2223 Female, age 72, unknown 93.8
1942 Male, age 51, unknown 81.5
2021 Male, age 53, unknown 80.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 97.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 97.7
Samples: 139

Max nTPM: 169.8
Min nTPM: 56.0
Std nTPM: 18.3
Median nTPM: 97.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 169.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 143.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 141.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 137.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 135.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 131.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 130.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 128.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 127.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 126.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 125.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.2
FF:10158-103A5 76 years, female 23.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 166.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 166.4
Samples: 4

Max nTPM: 207.6
Min nTPM: 145.0
Sample A Female 207.6
Sample B Female 145.7
Sample C Male 167.3
Sample D Male 145.0
Midbrain
nTPM: 161.5
Samples: 4

Max nTPM: 218.3
Min nTPM: 119.2
Sample A Female 218.3
Sample B Female 173.8
Sample C Male 119.2
Sample D Male 134.5
Periaqueductal gray
nTPM: 150.6
Samples: 3

Max nTPM: 156.6
Min nTPM: 143.8
Sample B Female 151.5
Sample C Male 156.6
Sample D Male 143.8
Superior colliculi
nTPM: 150.8
Samples: 4

Max nTPM: 175.2
Min nTPM: 135.3
Sample A Female 175.2
Sample B Female 135.3
Sample C Male 142.5
Sample D Male 150.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 109.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 109.3
Samples: 4

Max nTPM: 113.5
Min nTPM: 105.4
Sample A Male 107.4
Sample B Male 105.4
Sample C Female 111.0
Sample D Female 113.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
68667312 Antisense, RP_050201_02_A06, Mouse strain C57BL/6J (56 days, male) 2.8

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