MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.9 nTPM
HPA Brain:56.7 nTPM
GTEx:10.9 nTPM
FANTOM5:75.6 Scaled Tags Per Million
Pig:33.5 nTPM
Mouse:19.4 nTPM
Allen mouse:7.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.2
1870 Female, age 42, unknown 59.4
1833 Male, age 53, unknown 58.6
1830 Male, age 51, unknown 58.0
2219 Male, age 76, both hemispheres 56.3
2411 Female, age 72, unknown 55.7
2828 Female, age 72, unknown 53.8
1827 Male, age 72, unknown 49.7
2019 Male, age 18, unknown 49.3
2666 Male, age 74, left hemisphere 48.2
2586 Male, age 75, left hemisphere 43.4
Dorsal raphe nucleus
nTPM: 51.6
2016 Female, age 72, unknown 57.9
2750 Male, age 76, both hemispheres 56.4
2047 Male, age 72, unknown 50.1
1828 Male, age 53, unknown 49.5
2298 Female, age 72, unknown 43.9
Inferior colliculus
nTPM: 53.8
2849 Male, age 72, unknown 56.8
1848 Female, age 42, unknown 54.5
1890 Male, age 53, unknown 52.2
2097 Female, age 72, unknown 51.8
Median raphe nucleus
nTPM: 50.6
2220 Male, age 76, midline 50.6
Periaquaductal grey, anterior
nTPM: 47.6
1947 Male, age 18, unknown 49.0
2502 Female, age 75, unknown 47.8
1795 Male, age 51, unknown 46.1
Periaquaductal grey, dorsal
nTPM: 55.3
2850 Male, age 76, both hemispheres 60.8
1831 Male, age 72, unknown 54.6
1840 Male, age 53, unknown 53.2
2464 Female, age 72, unknown 52.7
Periaquaductal grey, lateral
nTPM: 51.3
2140 Male, age 76, both hemispheres 57.3
2053 Male, age 18, unknown 49.7
2272 Male, age 74, both hemispheres 46.9
Pretectal area
nTPM: 49.7
2825 Male, age 18, unknown 55.2
2316 Male, age 76, right hemisphere 55.1
1815 Male, age 53, unknown 54.8
1817 Female, age 42, unknown 50.1
2407 Male, age 75, both hemispheres 49.4
2007 Male, age 72, unknown 48.8
2667 Female, age 75, unknown 48.0
2224 Female, age 72, unknown 47.8
2273 Male, age 74, both hemispheres 47.8
1816 Male, age 51, unknown 45.5
1944 Female, age 72, unknown 44.0
Red nucleus
nTPM: 56.7
2503 Female, age 72, unknown 62.5
1865 Male, age 51, unknown 61.7
2823 Male, age 76, right hemisphere 60.3
1904 Male, age 53, unknown 59.1
1954 Female, age 42, unknown 58.4
1821 Female, age 72, unknown 58.0
2725 Female, age 75, unknown 56.2
2769 Male, age 72, unknown 54.8
2227 Male, age 72, unknown 54.7
2588 Male, age 74, left hemisphere 53.2
2785 Male, age 18, unknown 51.3
2584 Male, age 75, left hemisphere 50.6
Substantia nigra
nTPM: 51.5
2699 Male, age 18, unknown 59.7
2409 Female, age 72, unknown 59.3
1889 Female, age 72, unknown 54.7
2590 Female, age 75, unknown 54.1
2583 Male, age 75, right hemisphere 49.8
2665 Male, age 74, both hemispheres 49.6
2241 Male, age 72, unknown 49.5
1851 Male, age 51, unknown 47.3
1941 Male, age 53, unknown 47.1
1916 Female, age 42, unknown 43.3
Superior colliculus
nTPM: 51.3
1913 Female, age 42, unknown 61.3
1995 Male, age 72, unknown 59.7
1895 Male, age 76, right hemisphere 54.6
1839 Male, age 51, unknown 54.5
2587 Male, age 74, left hemisphere 52.5
2668 Female, age 75, unknown 49.9
1796 Male, age 53, unknown 47.5
2261 Male, age 18, unknown 46.5
2087 Female, age 72, unknown 43.1
2664 Male, age 75, both hemispheres 42.8
Ventral tegmental area
nTPM: 49.8
2223 Female, age 72, unknown 52.7
2410 Female, age 72, unknown 50.7
2021 Male, age 53, unknown 50.5
2218 Male, age 76, both hemispheres 49.4
1915 Female, age 42, unknown 48.4
1942 Male, age 51, unknown 47.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.9
Samples: 139

Max nTPM: 21.5
Min nTPM: 5.6
Std nTPM: 2.8
Median nTPM: 10.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 21.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 19.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 18.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 16.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 16.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 16.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 16.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 16.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 16.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 15.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 15.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.6
FF:10158-103A5 76 years, female 75.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.9
Samples: 4

Max nTPM: 36.9
Min nTPM: 27.0
Sample A Female 29.2
Sample B Female 27.0
Sample C Male 30.5
Sample D Male 36.9
Midbrain
nTPM: 33.5
Samples: 4

Max nTPM: 38.7
Min nTPM: 31.2
Sample A Female 38.7
Sample B Female 32.5
Sample C Male 31.6
Sample D Male 31.2
Periaqueductal gray
nTPM: 31.1
Samples: 3

Max nTPM: 31.2
Min nTPM: 30.9
Sample B Female 31.1
Sample C Male 31.2
Sample D Male 30.9
Superior colliculi
nTPM: 30.7
Samples: 4

Max nTPM: 33.7
Min nTPM: 27.1
Sample A Female 30.4
Sample B Female 27.1
Sample C Male 31.4
Sample D Male 33.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.4
Samples: 4

Max nTPM: 21.1
Min nTPM: 17.6
Sample A Male 17.6
Sample B Male 20.2
Sample C Female 21.1
Sample D Female 18.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.9
70300786 Antisense, RP_050607_02_D05, Mouse strain C57BL/6J (56 days, male) 7.9

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