MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.4 nTPM
HPA Brain:47.5 nTPM
GTEx:6.4 nTPM
FANTOM5:12.1 Scaled Tags Per Million
Pig:40.8 nTPM
Mouse:17.2 nTPM
Allen mouse:5.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.5
2219 Male, age 76, both hemispheres 46.3
2411 Female, age 72, unknown 44.4
1870 Female, age 42, unknown 43.9
1833 Male, age 53, unknown 39.0
2586 Male, age 75, left hemisphere 38.6
1827 Male, age 72, unknown 33.4
1830 Male, age 51, unknown 32.4
2666 Male, age 74, left hemisphere 27.1
2828 Female, age 72, unknown 27.0
2019 Male, age 18, unknown 23.3
Dorsal raphe nucleus
nTPM: 38.9
2047 Male, age 72, unknown 46.1
2298 Female, age 72, unknown 43.5
2750 Male, age 76, both hemispheres 40.2
2016 Female, age 72, unknown 36.5
1828 Male, age 53, unknown 28.1
Inferior colliculus
nTPM: 35.7
2849 Male, age 72, unknown 41.7
2097 Female, age 72, unknown 36.6
1848 Female, age 42, unknown 32.5
1890 Male, age 53, unknown 32.1
Median raphe nucleus
nTPM: 43.0
2220 Male, age 76, midline 43.0
Periaquaductal grey, anterior
nTPM: 39.8
1947 Male, age 18, unknown 57.8
2502 Female, age 75, unknown 32.2
1795 Male, age 51, unknown 29.6
Periaquaductal grey, dorsal
nTPM: 47.5
1840 Male, age 53, unknown 70.4
2850 Male, age 76, both hemispheres 40.8
2464 Female, age 72, unknown 40.2
1831 Male, age 72, unknown 38.7
Periaquaductal grey, lateral
nTPM: 31.3
2140 Male, age 76, both hemispheres 35.7
2053 Male, age 18, unknown 30.7
2272 Male, age 74, both hemispheres 27.5
Pretectal area
nTPM: 32.4
2224 Female, age 72, unknown 44.5
1816 Male, age 51, unknown 39.3
2825 Male, age 18, unknown 39.1
2667 Female, age 75, unknown 32.0
2007 Male, age 72, unknown 31.4
1817 Female, age 42, unknown 30.7
2273 Male, age 74, both hemispheres 30.0
2407 Male, age 75, both hemispheres 29.5
1944 Female, age 72, unknown 29.0
1815 Male, age 53, unknown 27.4
2316 Male, age 76, right hemisphere 23.7
Red nucleus
nTPM: 33.9
1954 Female, age 42, unknown 44.5
1821 Female, age 72, unknown 43.9
1904 Male, age 53, unknown 40.4
2769 Male, age 72, unknown 38.3
2227 Male, age 72, unknown 37.3
2725 Female, age 75, unknown 35.2
2503 Female, age 72, unknown 33.2
2823 Male, age 76, right hemisphere 31.7
1865 Male, age 51, unknown 31.3
2584 Male, age 75, left hemisphere 26.1
2588 Male, age 74, left hemisphere 25.1
2785 Male, age 18, unknown 20.3
Substantia nigra
nTPM: 33.8
2699 Male, age 18, unknown 40.5
2409 Female, age 72, unknown 39.5
1916 Female, age 42, unknown 36.8
1889 Female, age 72, unknown 34.4
2241 Male, age 72, unknown 33.7
1941 Male, age 53, unknown 33.3
2583 Male, age 75, right hemisphere 32.2
1851 Male, age 51, unknown 29.5
2590 Female, age 75, unknown 29.5
2665 Male, age 74, both hemispheres 28.9
Superior colliculus
nTPM: 30.2
1839 Male, age 51, unknown 39.7
2668 Female, age 75, unknown 37.6
2261 Male, age 18, unknown 32.3
2664 Male, age 75, both hemispheres 32.0
2087 Female, age 72, unknown 31.0
2587 Male, age 74, left hemisphere 29.0
1796 Male, age 53, unknown 28.4
1895 Male, age 76, right hemisphere 27.5
1913 Female, age 42, unknown 24.1
1995 Male, age 72, unknown 20.2
Ventral tegmental area
nTPM: 36.8
2218 Male, age 76, both hemispheres 46.7
1915 Female, age 42, unknown 38.7
2410 Female, age 72, unknown 38.3
1942 Male, age 51, unknown 36.7
2021 Male, age 53, unknown 31.9
2223 Female, age 72, unknown 28.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.4
Samples: 139

Max nTPM: 13.1
Min nTPM: 2.7
Std nTPM: 1.9
Median nTPM: 6.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 13.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 13.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 11.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 10.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 10.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 10.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 10.2
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 9.5
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 9.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 9.3
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 9.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.1
FF:10158-103A5 76 years, female 12.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.1
Samples: 4

Max nTPM: 34.2
Min nTPM: 23.5
Sample A Female 34.2
Sample B Female 28.6
Sample C Male 34.1
Sample D Male 23.5
Midbrain
nTPM: 27.3
Samples: 4

Max nTPM: 33.3
Min nTPM: 18.3
Sample A Female 18.3
Sample B Female 33.3
Sample C Male 26.3
Sample D Male 31.4
Periaqueductal gray
nTPM: 40.8
Samples: 3

Max nTPM: 50.9
Min nTPM: 34.9
Sample B Female 34.9
Sample C Male 50.9
Sample D Male 36.6
Superior colliculi
nTPM: 18.7
Samples: 4

Max nTPM: 26.7
Min nTPM: 11.6
Sample A Female 26.7
Sample B Female 11.6
Sample C Male 15.2
Sample D Male 21.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.2
Samples: 4

Max nTPM: 18.5
Min nTPM: 14.0
Sample A Male 14.0
Sample B Male 18.1
Sample C Female 18.0
Sample D Female 18.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.7
73636095 Antisense, RP_050926_01_G04, Mouse strain C57BL/6J (56 days, male) 5.7
71764739 Antisense, RP_050926_01_G04, Mouse strain C57BL/6J (56 days, male) 5.2

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