MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.7 nTPM
HPA Brain:31.2 nTPM
GTEx:16.7 nTPM
FANTOM5:10.6 Scaled Tags Per Million
Pig:8.3 nTPM
Mouse:0.5 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.5
1830 Male, age 51, unknown 31.9
1870 Female, age 42, unknown 30.5
2411 Female, age 72, unknown 29.1
2586 Male, age 75, left hemisphere 28.6
2666 Male, age 74, left hemisphere 28.2
2828 Female, age 72, unknown 28.0
2019 Male, age 18, unknown 27.6
1833 Male, age 53, unknown 27.4
1827 Male, age 72, unknown 22.6
2219 Male, age 76, both hemispheres 21.1
Dorsal raphe nucleus
nTPM: 22.3
2750 Male, age 76, both hemispheres 30.6
2016 Female, age 72, unknown 24.1
1828 Male, age 53, unknown 21.3
2047 Male, age 72, unknown 19.6
2298 Female, age 72, unknown 16.1
Inferior colliculus
nTPM: 21.0
2849 Male, age 72, unknown 25.5
1848 Female, age 42, unknown 21.6
1890 Male, age 53, unknown 21.0
2097 Female, age 72, unknown 15.8
Median raphe nucleus
nTPM: 17.7
2220 Male, age 76, midline 17.7
Periaquaductal grey, anterior
nTPM: 26.5
2502 Female, age 75, unknown 30.7
1795 Male, age 51, unknown 24.8
1947 Male, age 18, unknown 24.1
Periaquaductal grey, dorsal
nTPM: 20.8
2464 Female, age 72, unknown 24.9
1840 Male, age 53, unknown 21.3
1831 Male, age 72, unknown 20.3
2850 Male, age 76, both hemispheres 16.6
Periaquaductal grey, lateral
nTPM: 21.5
2053 Male, age 18, unknown 25.2
2140 Male, age 76, both hemispheres 21.2
2272 Male, age 74, both hemispheres 18.2
Pretectal area
nTPM: 22.9
2316 Male, age 76, right hemisphere 34.4
2407 Male, age 75, both hemispheres 29.3
2825 Male, age 18, unknown 24.9
2667 Female, age 75, unknown 24.8
1815 Male, age 53, unknown 24.1
1817 Female, age 42, unknown 22.1
2007 Male, age 72, unknown 20.5
2224 Female, age 72, unknown 20.3
2273 Male, age 74, both hemispheres 19.1
1816 Male, age 51, unknown 16.6
1944 Female, age 72, unknown 15.9
Red nucleus
nTPM: 31.2
1904 Male, age 53, unknown 38.3
2823 Male, age 76, right hemisphere 36.4
1865 Male, age 51, unknown 35.9
2769 Male, age 72, unknown 34.9
2785 Male, age 18, unknown 34.0
1821 Female, age 72, unknown 31.7
2227 Male, age 72, unknown 30.4
2588 Male, age 74, left hemisphere 29.1
2584 Male, age 75, left hemisphere 28.1
2503 Female, age 72, unknown 27.2
1954 Female, age 42, unknown 26.4
2725 Female, age 75, unknown 22.4
Substantia nigra
nTPM: 21.1
2409 Female, age 72, unknown 30.5
2583 Male, age 75, right hemisphere 24.0
2590 Female, age 75, unknown 22.1
1851 Male, age 51, unknown 22.0
2665 Male, age 74, both hemispheres 21.6
1889 Female, age 72, unknown 20.8
2241 Male, age 72, unknown 19.1
2699 Male, age 18, unknown 18.9
1941 Male, age 53, unknown 17.9
1916 Female, age 42, unknown 14.5
Superior colliculus
nTPM: 25.8
1895 Male, age 76, right hemisphere 31.3
1913 Female, age 42, unknown 31.1
1995 Male, age 72, unknown 29.9
2664 Male, age 75, both hemispheres 28.8
1839 Male, age 51, unknown 27.0
2668 Female, age 75, unknown 25.7
2587 Male, age 74, left hemisphere 25.2
1796 Male, age 53, unknown 22.1
2261 Male, age 18, unknown 20.9
2087 Female, age 72, unknown 16.5
Ventral tegmental area
nTPM: 20.4
2410 Female, age 72, unknown 26.0
2223 Female, age 72, unknown 22.7
2021 Male, age 53, unknown 19.7
1915 Female, age 42, unknown 19.2
1942 Male, age 51, unknown 18.8
2218 Male, age 76, both hemispheres 16.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.7
Samples: 139

Max nTPM: 38.6
Min nTPM: 5.7
Std nTPM: 5.6
Median nTPM: 15.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 38.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 34.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 31.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 30.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 28.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 27.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 27.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 27.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 26.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 26.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 26.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.6
FF:10158-103A5 76 years, female 10.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.3
Samples: 4

Max nTPM: 10.1
Min nTPM: 7.0
Sample A Female 7.0
Sample B Female 10.1
Sample C Male 7.0
Sample D Male 9.1
Midbrain
nTPM: 8.0
Samples: 4

Max nTPM: 11.6
Min nTPM: 6.6
Sample A Female 11.6
Sample B Female 6.6
Sample C Male 7.0
Sample D Male 6.9
Periaqueductal gray
nTPM: 7.3
Samples: 3

Max nTPM: 8.1
Min nTPM: 6.7
Sample B Female 6.7
Sample C Male 7.0
Sample D Male 8.1
Superior colliculi
nTPM: 7.0
Samples: 4

Max nTPM: 8.0
Min nTPM: 6.1
Sample A Female 6.1
Sample B Female 8.0
Sample C Male 6.5
Sample D Male 7.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.5
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.1
Sample A Male 0.9
Sample B Male 0.4
Sample C Female 0.1
Sample D Female 0.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68157404 Antisense, RP_041116_02_E09, Mouse strain C57BL/6J (56 days, male) 0.3

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