MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.4 nTPM
HPA Brain:87.6 nTPM
GTEx:24.4 nTPM
FANTOM5:43.5 Scaled Tags Per Million
Pig:8.8 nTPM
Mouse:21.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 87.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.6
2586 Male, age 75, left hemisphere 119.5
2828 Female, age 72, unknown 79.6
1827 Male, age 72, unknown 69.1
1870 Female, age 42, unknown 66.1
1833 Male, age 53, unknown 65.4
1830 Male, age 51, unknown 60.1
2411 Female, age 72, unknown 55.6
2666 Male, age 74, left hemisphere 55.2
2019 Male, age 18, unknown 48.0
2219 Male, age 76, both hemispheres 47.4
Dorsal raphe nucleus
nTPM: 77.3
2016 Female, age 72, unknown 91.4
2047 Male, age 72, unknown 87.3
1828 Male, age 53, unknown 81.8
2298 Female, age 72, unknown 72.7
2750 Male, age 76, both hemispheres 53.2
Inferior colliculus
nTPM: 87.6
1848 Female, age 42, unknown 99.2
2849 Male, age 72, unknown 98.3
1890 Male, age 53, unknown 80.2
2097 Female, age 72, unknown 72.6
Median raphe nucleus
nTPM: 67.1
2220 Male, age 76, midline 67.1
Periaquaductal grey, anterior
nTPM: 75.5
1795 Male, age 51, unknown 80.6
2502 Female, age 75, unknown 73.5
1947 Male, age 18, unknown 72.4
Periaquaductal grey, dorsal
nTPM: 86.2
1840 Male, age 53, unknown 107.6
2850 Male, age 76, both hemispheres 87.6
2464 Female, age 72, unknown 76.0
1831 Male, age 72, unknown 73.7
Periaquaductal grey, lateral
nTPM: 86.7
2140 Male, age 76, both hemispheres 102.9
2053 Male, age 18, unknown 97.5
2272 Male, age 74, both hemispheres 59.8
Pretectal area
nTPM: 70.0
2825 Male, age 18, unknown 84.2
2316 Male, age 76, right hemisphere 83.6
2407 Male, age 75, both hemispheres 83.2
2224 Female, age 72, unknown 71.7
2667 Female, age 75, unknown 71.3
1944 Female, age 72, unknown 69.6
1817 Female, age 42, unknown 66.0
2273 Male, age 74, both hemispheres 65.7
1816 Male, age 51, unknown 65.2
1815 Male, age 53, unknown 57.2
2007 Male, age 72, unknown 51.8
Red nucleus
nTPM: 67.5
2769 Male, age 72, unknown 78.0
2725 Female, age 75, unknown 76.0
2227 Male, age 72, unknown 75.8
2503 Female, age 72, unknown 74.5
1954 Female, age 42, unknown 72.2
2823 Male, age 76, right hemisphere 71.1
2584 Male, age 75, left hemisphere 66.9
1865 Male, age 51, unknown 65.2
1821 Female, age 72, unknown 64.5
1904 Male, age 53, unknown 61.1
2588 Male, age 74, left hemisphere 60.7
2785 Male, age 18, unknown 43.8
Substantia nigra
nTPM: 73.9
2699 Male, age 18, unknown 105.8
1916 Female, age 42, unknown 90.4
1851 Male, age 51, unknown 73.2
2583 Male, age 75, right hemisphere 73.0
2665 Male, age 74, both hemispheres 71.7
2590 Female, age 75, unknown 70.4
2409 Female, age 72, unknown 68.8
1889 Female, age 72, unknown 65.1
1941 Male, age 53, unknown 60.1
2241 Male, age 72, unknown 60.1
Superior colliculus
nTPM: 70.9
2664 Male, age 75, both hemispheres 91.7
1796 Male, age 53, unknown 78.0
2261 Male, age 18, unknown 73.0
2087 Female, age 72, unknown 72.0
1839 Male, age 51, unknown 71.4
1995 Male, age 72, unknown 71.0
1913 Female, age 42, unknown 65.8
2668 Female, age 75, unknown 63.8
2587 Male, age 74, left hemisphere 61.7
1895 Male, age 76, right hemisphere 60.8
Ventral tegmental area
nTPM: 70.2
1915 Female, age 42, unknown 79.0
2021 Male, age 53, unknown 78.8
1942 Male, age 51, unknown 74.5
2410 Female, age 72, unknown 66.2
2218 Male, age 76, both hemispheres 63.2
2223 Female, age 72, unknown 59.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.4
Samples: 139

Max nTPM: 108.8
Min nTPM: 4.8
Std nTPM: 14.3
Median nTPM: 21.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 108.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 77.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 69.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 66.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 61.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 56.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 51.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 50.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 45.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 45.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 44.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.5
FF:10158-103A5 76 years, female 43.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.8
Samples: 4

Max nTPM: 9.4
Min nTPM: 8.2
Sample A Female 8.7
Sample B Female 9.4
Sample C Male 9.0
Sample D Male 8.2
Midbrain
nTPM: 8.3
Samples: 4

Max nTPM: 9.2
Min nTPM: 7.1
Sample A Female 7.1
Sample B Female 9.1
Sample C Male 7.8
Sample D Male 9.2
Periaqueductal gray
nTPM: 8.4
Samples: 3

Max nTPM: 9.2
Min nTPM: 7.2
Sample B Female 9.2
Sample C Male 8.7
Sample D Male 7.2
Superior colliculi
nTPM: 7.7
Samples: 4

Max nTPM: 8.9
Min nTPM: 7.0
Sample A Female 8.9
Sample B Female 7.5
Sample C Male 7.2
Sample D Male 7.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.4
Samples: 4

Max nTPM: 22.8
Min nTPM: 19.7
Sample A Male 22.0
Sample B Male 20.9
Sample C Female 19.7
Sample D Female 22.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70546263 Antisense, RP_050623_03_H07, Mouse strain C57BL/6J (56 days, male) 0.0

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