MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.3 nTPM
HPA Brain:62.7 nTPM
GTEx:42.3 nTPM
FANTOM5:62.5 Scaled Tags Per Million
Pig:5.0 nTPM
Mouse:6.1 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.7
2666 Male, age 74, left hemisphere 65.9
2586 Male, age 75, left hemisphere 60.8
1833 Male, age 53, unknown 52.8
1830 Male, age 51, unknown 52.1
2828 Female, age 72, unknown 50.3
1870 Female, age 42, unknown 43.6
2411 Female, age 72, unknown 39.6
2019 Male, age 18, unknown 38.7
1827 Male, age 72, unknown 37.6
2219 Male, age 76, both hemispheres 26.0
Dorsal raphe nucleus
nTPM: 30.8
2016 Female, age 72, unknown 43.3
2750 Male, age 76, both hemispheres 37.8
1828 Male, age 53, unknown 30.1
2047 Male, age 72, unknown 25.0
2298 Female, age 72, unknown 17.9
Inferior colliculus
nTPM: 27.6
2849 Male, age 72, unknown 31.9
1848 Female, age 42, unknown 31.2
1890 Male, age 53, unknown 27.0
2097 Female, age 72, unknown 20.4
Median raphe nucleus
nTPM: 25.2
2220 Male, age 76, midline 25.2
Periaquaductal grey, anterior
nTPM: 25.0
2502 Female, age 75, unknown 29.0
1795 Male, age 51, unknown 23.3
1947 Male, age 18, unknown 22.6
Periaquaductal grey, dorsal
nTPM: 25.8
1831 Male, age 72, unknown 34.8
2464 Female, age 72, unknown 31.2
1840 Male, age 53, unknown 18.7
2850 Male, age 76, both hemispheres 18.5
Periaquaductal grey, lateral
nTPM: 27.3
2053 Male, age 18, unknown 36.2
2272 Male, age 74, both hemispheres 25.3
2140 Male, age 76, both hemispheres 20.5
Pretectal area
nTPM: 29.3
2316 Male, age 76, right hemisphere 40.9
1815 Male, age 53, unknown 37.7
2407 Male, age 75, both hemispheres 36.1
2825 Male, age 18, unknown 35.0
2224 Female, age 72, unknown 32.1
1817 Female, age 42, unknown 29.7
2007 Male, age 72, unknown 26.6
2273 Male, age 74, both hemispheres 23.9
1944 Female, age 72, unknown 23.8
2667 Female, age 75, unknown 19.3
1816 Male, age 51, unknown 17.1
Red nucleus
nTPM: 62.7
2588 Male, age 74, left hemisphere 84.8
1865 Male, age 51, unknown 83.0
1904 Male, age 53, unknown 78.1
2725 Female, age 75, unknown 65.2
2823 Male, age 76, right hemisphere 62.5
1954 Female, age 42, unknown 58.8
2227 Male, age 72, unknown 58.1
2503 Female, age 72, unknown 56.3
2584 Male, age 75, left hemisphere 54.1
2769 Male, age 72, unknown 53.6
2785 Male, age 18, unknown 50.8
1821 Female, age 72, unknown 46.7
Substantia nigra
nTPM: 35.0
2583 Male, age 75, right hemisphere 47.8
2699 Male, age 18, unknown 43.2
2590 Female, age 75, unknown 43.1
2665 Male, age 74, both hemispheres 40.6
1851 Male, age 51, unknown 40.5
2409 Female, age 72, unknown 30.6
2241 Male, age 72, unknown 28.4
1889 Female, age 72, unknown 28.3
1941 Male, age 53, unknown 26.1
1916 Female, age 42, unknown 21.8
Superior colliculus
nTPM: 36.7
1995 Male, age 72, unknown 48.4
1913 Female, age 42, unknown 44.5
2587 Male, age 74, left hemisphere 44.0
1839 Male, age 51, unknown 39.5
1895 Male, age 76, right hemisphere 38.0
2664 Male, age 75, both hemispheres 35.7
2668 Female, age 75, unknown 33.6
1796 Male, age 53, unknown 28.5
2087 Female, age 72, unknown 28.5
2261 Male, age 18, unknown 26.4
Ventral tegmental area
nTPM: 34.6
2410 Female, age 72, unknown 42.7
2021 Male, age 53, unknown 37.1
2223 Female, age 72, unknown 36.6
1915 Female, age 42, unknown 33.6
1942 Male, age 51, unknown 29.3
2218 Male, age 76, both hemispheres 28.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.3
Samples: 139

Max nTPM: 211.0
Min nTPM: 6.9
Std nTPM: 30.3
Median nTPM: 34.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 211.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 158.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 135.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 129.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 106.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 97.8
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 93.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 91.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 87.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 85.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 84.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.5
FF:10158-103A5 76 years, female 62.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.4
Samples: 4

Max nTPM: 7.7
Min nTPM: 2.2
Sample A Female 3.6
Sample B Female 7.7
Sample C Male 2.2
Sample D Male 4.1
Midbrain
nTPM: 2.1
Samples: 4

Max nTPM: 3.0
Min nTPM: 1.5
Sample A Female 2.2
Sample B Female 1.5
Sample C Male 3.0
Sample D Male 1.7
Periaqueductal gray
nTPM: 0.8
Samples: 3

Max nTPM: 1.0
Min nTPM: 0.7
Sample B Female 1.0
Sample C Male 0.8
Sample D Male 0.7
Superior colliculi
nTPM: 5.0
Samples: 4

Max nTPM: 9.4
Min nTPM: 2.8
Sample A Female 4.1
Sample B Female 9.4
Sample C Male 2.8
Sample D Male 3.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.1
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.6
Sample A Male 6.3
Sample B Male 5.6
Sample C Female 6.7
Sample D Female 5.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
2667 Antisense, RP_040420_01_H06, Mouse strain C57BL/6J (56 days, male) 1.7
2668 Antisense, RP_040420_01_H06, Mouse strain C57BL/6J (56 days, male) 1.5

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