MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.7 nTPM
HPA Brain:59.3 nTPM
GTEx:56.7 nTPM
FANTOM5:102.0 Scaled Tags Per Million
Pig:74.0 nTPM
Mouse:104.9 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.2
2019 Male, age 18, unknown 63.0
2411 Female, age 72, unknown 62.4
1827 Male, age 72, unknown 55.4
1870 Female, age 42, unknown 52.8
1833 Male, age 53, unknown 49.9
1830 Male, age 51, unknown 49.3
2586 Male, age 75, left hemisphere 46.9
2219 Male, age 76, both hemispheres 44.3
2666 Male, age 74, left hemisphere 44.3
2828 Female, age 72, unknown 43.5
Dorsal raphe nucleus
nTPM: 59.3
2298 Female, age 72, unknown 70.0
2047 Male, age 72, unknown 63.5
1828 Male, age 53, unknown 61.2
2750 Male, age 76, both hemispheres 51.1
2016 Female, age 72, unknown 50.6
Inferior colliculus
nTPM: 55.6
2097 Female, age 72, unknown 64.1
1848 Female, age 42, unknown 58.3
1890 Male, age 53, unknown 50.7
2849 Male, age 72, unknown 49.4
Median raphe nucleus
nTPM: 56.3
2220 Male, age 76, midline 56.3
Periaquaductal grey, anterior
nTPM: 50.4
1947 Male, age 18, unknown 53.7
2502 Female, age 75, unknown 51.9
1795 Male, age 51, unknown 45.7
Periaquaductal grey, dorsal
nTPM: 50.3
1840 Male, age 53, unknown 54.9
2850 Male, age 76, both hemispheres 53.2
2464 Female, age 72, unknown 48.9
1831 Male, age 72, unknown 44.3
Periaquaductal grey, lateral
nTPM: 53.1
2272 Male, age 74, both hemispheres 64.1
2053 Male, age 18, unknown 48.4
2140 Male, age 76, both hemispheres 46.8
Pretectal area
nTPM: 56.9
1816 Male, age 51, unknown 67.4
1817 Female, age 42, unknown 66.6
2273 Male, age 74, both hemispheres 66.4
2007 Male, age 72, unknown 63.6
1944 Female, age 72, unknown 62.7
2224 Female, age 72, unknown 57.3
2667 Female, age 75, unknown 55.9
1815 Male, age 53, unknown 53.6
2825 Male, age 18, unknown 47.6
2316 Male, age 76, right hemisphere 42.8
2407 Male, age 75, both hemispheres 42.3
Red nucleus
nTPM: 50.6
1821 Female, age 72, unknown 70.0
1954 Female, age 42, unknown 57.2
2785 Male, age 18, unknown 52.3
2725 Female, age 75, unknown 51.4
1865 Male, age 51, unknown 49.8
2503 Female, age 72, unknown 49.6
2769 Male, age 72, unknown 49.6
1904 Male, age 53, unknown 49.1
2227 Male, age 72, unknown 48.5
2588 Male, age 74, left hemisphere 45.5
2823 Male, age 76, right hemisphere 44.0
2584 Male, age 75, left hemisphere 40.6
Substantia nigra
nTPM: 57.8
1916 Female, age 42, unknown 69.9
2241 Male, age 72, unknown 67.3
1889 Female, age 72, unknown 66.4
1941 Male, age 53, unknown 66.0
1851 Male, age 51, unknown 60.3
2409 Female, age 72, unknown 54.2
2590 Female, age 75, unknown 53.5
2699 Male, age 18, unknown 49.1
2583 Male, age 75, right hemisphere 46.1
2665 Male, age 74, both hemispheres 45.4
Superior colliculus
nTPM: 50.5
1895 Male, age 76, right hemisphere 56.7
2587 Male, age 74, left hemisphere 55.6
2261 Male, age 18, unknown 54.4
2087 Female, age 72, unknown 53.5
2668 Female, age 75, unknown 51.1
1839 Male, age 51, unknown 50.7
1796 Male, age 53, unknown 47.9
2664 Male, age 75, both hemispheres 47.9
1913 Female, age 42, unknown 44.5
1995 Male, age 72, unknown 42.4
Ventral tegmental area
nTPM: 52.9
2410 Female, age 72, unknown 62.6
1915 Female, age 42, unknown 56.7
2218 Male, age 76, both hemispheres 50.9
2223 Female, age 72, unknown 50.1
2021 Male, age 53, unknown 50.0
1942 Male, age 51, unknown 47.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.7
Samples: 139

Max nTPM: 121.9
Min nTPM: 33.7
Std nTPM: 12.3
Median nTPM: 54.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 121.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 96.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 94.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 93.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 91.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 88.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 84.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 76.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 74.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 73.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 73.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 102.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 102.0
FF:10158-103A5 76 years, female 102.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 74.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 66.6
Samples: 4

Max nTPM: 86.9
Min nTPM: 50.0
Sample A Female 86.9
Sample B Female 61.8
Sample C Male 67.6
Sample D Male 50.0
Midbrain
nTPM: 68.9
Samples: 4

Max nTPM: 71.0
Min nTPM: 67.7
Sample A Female 68.8
Sample B Female 71.0
Sample C Male 67.7
Sample D Male 68.0
Periaqueductal gray
nTPM: 68.0
Samples: 3

Max nTPM: 72.8
Min nTPM: 64.8
Sample B Female 66.4
Sample C Male 72.8
Sample D Male 64.8
Superior colliculi
nTPM: 74.0
Samples: 4

Max nTPM: 84.1
Min nTPM: 60.9
Sample A Female 84.1
Sample B Female 77.7
Sample C Male 73.4
Sample D Male 60.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 104.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 104.9
Samples: 4

Max nTPM: 108.8
Min nTPM: 102.1
Sample A Male 106.5
Sample B Male 102.1
Sample C Female 102.2
Sample D Female 108.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
70195084 Antisense, RP_050517_02_D02, Mouse strain C57BL/6J (56 days, male) 0.4

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