MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.8 nTPM
HPA Brain:18.5 nTPM
GTEx:4.8 nTPM
FANTOM5:45.4 Scaled Tags Per Million
Pig:24.7 nTPM
Mouse:23.0 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.6
2411 Female, age 72, unknown 17.4
2019 Male, age 18, unknown 17.1
2828 Female, age 72, unknown 16.2
1827 Male, age 72, unknown 15.8
1870 Female, age 42, unknown 15.4
1830 Male, age 51, unknown 14.1
1833 Male, age 53, unknown 14.0
2219 Male, age 76, both hemispheres 13.6
2666 Male, age 74, left hemisphere 13.0
2586 Male, age 75, left hemisphere 9.5
Dorsal raphe nucleus
nTPM: 17.7
2298 Female, age 72, unknown 18.4
2750 Male, age 76, both hemispheres 18.4
2016 Female, age 72, unknown 17.7
2047 Male, age 72, unknown 17.7
1828 Male, age 53, unknown 16.2
Inferior colliculus
nTPM: 14.9
2097 Female, age 72, unknown 17.1
1890 Male, age 53, unknown 15.1
1848 Female, age 42, unknown 14.6
2849 Male, age 72, unknown 12.9
Median raphe nucleus
nTPM: 16.6
2220 Male, age 76, midline 16.6
Periaquaductal grey, anterior
nTPM: 15.8
1947 Male, age 18, unknown 17.3
1795 Male, age 51, unknown 15.2
2502 Female, age 75, unknown 14.9
Periaquaductal grey, dorsal
nTPM: 16.1
1840 Male, age 53, unknown 17.9
2850 Male, age 76, both hemispheres 16.0
2464 Female, age 72, unknown 15.7
1831 Male, age 72, unknown 15.0
Periaquaductal grey, lateral
nTPM: 15.7
2272 Male, age 74, both hemispheres 17.8
2140 Male, age 76, both hemispheres 16.1
2053 Male, age 18, unknown 13.3
Pretectal area
nTPM: 17.7
2273 Male, age 74, both hemispheres 24.1
1817 Female, age 42, unknown 18.8
1944 Female, age 72, unknown 18.8
2007 Male, age 72, unknown 18.1
1816 Male, age 51, unknown 17.7
2667 Female, age 75, unknown 17.6
2316 Male, age 76, right hemisphere 17.5
1815 Male, age 53, unknown 17.0
2224 Female, age 72, unknown 16.4
2825 Male, age 18, unknown 15.7
2407 Male, age 75, both hemispheres 12.6
Red nucleus
nTPM: 14.8
1821 Female, age 72, unknown 17.8
2503 Female, age 72, unknown 17.7
2785 Male, age 18, unknown 16.5
2823 Male, age 76, right hemisphere 16.0
1954 Female, age 42, unknown 15.7
2725 Female, age 75, unknown 15.7
2227 Male, age 72, unknown 14.2
1865 Male, age 51, unknown 14.0
1904 Male, age 53, unknown 13.9
2769 Male, age 72, unknown 13.1
2588 Male, age 74, left hemisphere 12.5
2584 Male, age 75, left hemisphere 10.3
Substantia nigra
nTPM: 18.5
1941 Male, age 53, unknown 23.1
2409 Female, age 72, unknown 20.9
2241 Male, age 72, unknown 20.6
1916 Female, age 42, unknown 19.7
1851 Male, age 51, unknown 19.3
1889 Female, age 72, unknown 17.3
2665 Male, age 74, both hemispheres 17.1
2590 Female, age 75, unknown 16.2
2699 Male, age 18, unknown 15.7
2583 Male, age 75, right hemisphere 15.6
Superior colliculus
nTPM: 15.4
2087 Female, age 72, unknown 17.4
2668 Female, age 75, unknown 17.0
1995 Male, age 72, unknown 16.9
2261 Male, age 18, unknown 16.0
2587 Male, age 74, left hemisphere 15.7
1839 Male, age 51, unknown 15.6
1895 Male, age 76, right hemisphere 15.2
1913 Female, age 42, unknown 14.9
1796 Male, age 53, unknown 14.1
2664 Male, age 75, both hemispheres 11.0
Ventral tegmental area
nTPM: 17.3
2218 Male, age 76, both hemispheres 19.0
1915 Female, age 42, unknown 18.1
2410 Female, age 72, unknown 18.1
1942 Male, age 51, unknown 17.6
2021 Male, age 53, unknown 16.0
2223 Female, age 72, unknown 15.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.8
Samples: 139

Max nTPM: 13.5
Min nTPM: 1.3
Std nTPM: 1.7
Median nTPM: 4.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 13.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 11.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 7.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 7.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 7.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 7.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 7.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 7.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 7.2
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 7.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 7.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.4
FF:10158-103A5 76 years, female 45.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.1
Samples: 4

Max nTPM: 24.5
Min nTPM: 18.2
Sample A Female 24.5
Sample B Female 18.2
Sample C Male 22.6
Sample D Male 23.1
Midbrain
nTPM: 24.7
Samples: 4

Max nTPM: 34.4
Min nTPM: 19.4
Sample A Female 34.4
Sample B Female 21.0
Sample C Male 24.0
Sample D Male 19.4
Periaqueductal gray
nTPM: 21.0
Samples: 3

Max nTPM: 22.0
Min nTPM: 19.2
Sample B Female 22.0
Sample C Male 21.8
Sample D Male 19.2
Superior colliculi
nTPM: 21.3
Samples: 4

Max nTPM: 22.3
Min nTPM: 20.4
Sample A Female 22.0
Sample B Female 20.4
Sample C Male 22.3
Sample D Male 20.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.0
Samples: 4

Max nTPM: 24.0
Min nTPM: 22.5
Sample A Male 22.8
Sample B Male 22.5
Sample C Female 22.8
Sample D Female 24.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
75990608 Antisense, RP_060608_01_E03, Mouse strain C57BL/6J (56 days, male) 0.9

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