MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:67.4 nTPM
HPA Brain:66.6 nTPM
GTEx:67.4 nTPM
FANTOM5:130.4 Scaled Tags Per Million
Pig:6.1 nTPM
Mouse:95.4 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 66.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.1
2828 Female, age 72, unknown 48.3
2411 Female, age 72, unknown 46.6
2666 Male, age 74, left hemisphere 43.3
1870 Female, age 42, unknown 42.5
2019 Male, age 18, unknown 40.9
2586 Male, age 75, left hemisphere 40.4
2219 Male, age 76, both hemispheres 40.1
1830 Male, age 51, unknown 39.8
1833 Male, age 53, unknown 39.7
1827 Male, age 72, unknown 39.2
Dorsal raphe nucleus
nTPM: 58.4
2298 Female, age 72, unknown 69.9
2047 Male, age 72, unknown 63.5
1828 Male, age 53, unknown 56.5
2016 Female, age 72, unknown 55.2
2750 Male, age 76, both hemispheres 47.0
Inferior colliculus
nTPM: 51.8
2097 Female, age 72, unknown 62.0
1848 Female, age 42, unknown 51.9
1890 Male, age 53, unknown 49.6
2849 Male, age 72, unknown 43.6
Median raphe nucleus
nTPM: 58.9
2220 Male, age 76, midline 58.9
Periaquaductal grey, anterior
nTPM: 46.7
1795 Male, age 51, unknown 50.1
2502 Female, age 75, unknown 47.6
1947 Male, age 18, unknown 42.3
Periaquaductal grey, dorsal
nTPM: 49.5
2850 Male, age 76, both hemispheres 66.6
1840 Male, age 53, unknown 45.8
2464 Female, age 72, unknown 44.3
1831 Male, age 72, unknown 41.4
Periaquaductal grey, lateral
nTPM: 55.0
2272 Male, age 74, both hemispheres 67.1
2140 Male, age 76, both hemispheres 51.1
2053 Male, age 18, unknown 46.9
Pretectal area
nTPM: 47.4
2667 Female, age 75, unknown 66.7
2273 Male, age 74, both hemispheres 64.4
1944 Female, age 72, unknown 50.6
1816 Male, age 51, unknown 48.5
2224 Female, age 72, unknown 48.0
2825 Male, age 18, unknown 47.8
1817 Female, age 42, unknown 46.4
2007 Male, age 72, unknown 41.8
1815 Male, age 53, unknown 40.1
2316 Male, age 76, right hemisphere 35.5
2407 Male, age 75, both hemispheres 31.8
Red nucleus
nTPM: 51.9
1954 Female, age 42, unknown 67.2
2725 Female, age 75, unknown 60.9
1821 Female, age 72, unknown 60.8
2823 Male, age 76, right hemisphere 56.6
2769 Male, age 72, unknown 54.6
2503 Female, age 72, unknown 54.1
2227 Male, age 72, unknown 52.7
1904 Male, age 53, unknown 51.7
1865 Male, age 51, unknown 51.4
2588 Male, age 74, left hemisphere 41.1
2785 Male, age 18, unknown 39.8
2584 Male, age 75, left hemisphere 31.7
Substantia nigra
nTPM: 66.6
1916 Female, age 42, unknown 114.3
1941 Male, age 53, unknown 90.4
2699 Male, age 18, unknown 87.7
2241 Male, age 72, unknown 76.2
1851 Male, age 51, unknown 68.0
1889 Female, age 72, unknown 52.7
2409 Female, age 72, unknown 50.7
2665 Male, age 74, both hemispheres 46.4
2583 Male, age 75, right hemisphere 43.7
2590 Female, age 75, unknown 35.9
Superior colliculus
nTPM: 44.2
2087 Female, age 72, unknown 53.4
2261 Male, age 18, unknown 50.8
1995 Male, age 72, unknown 48.5
2587 Male, age 74, left hemisphere 47.1
1796 Male, age 53, unknown 46.0
2668 Female, age 75, unknown 43.4
1913 Female, age 42, unknown 43.1
1839 Male, age 51, unknown 40.3
2664 Male, age 75, both hemispheres 36.3
1895 Male, age 76, right hemisphere 33.2
Ventral tegmental area
nTPM: 59.2
1915 Female, age 42, unknown 72.0
2410 Female, age 72, unknown 65.9
2218 Male, age 76, both hemispheres 60.0
1942 Male, age 51, unknown 54.6
2021 Male, age 53, unknown 52.3
2223 Female, age 72, unknown 50.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 67.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.4
Samples: 139

Max nTPM: 112.0
Min nTPM: 30.5
Std nTPM: 16.8
Median nTPM: 67.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 112.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 107.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 105.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 104.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 103.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 95.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 93.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 93.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 93.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 91.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 90.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 130.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 130.4
FF:10158-103A5 76 years, female 130.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.7
Samples: 4

Max nTPM: 6.9
Min nTPM: 4.7
Sample A Female 6.9
Sample B Female 5.0
Sample C Male 6.2
Sample D Male 4.7
Midbrain
nTPM: 5.3
Samples: 4

Max nTPM: 6.5
Min nTPM: 4.3
Sample A Female 6.5
Sample B Female 4.3
Sample C Male 5.8
Sample D Male 4.4
Periaqueductal gray
nTPM: 4.5
Samples: 3

Max nTPM: 5.3
Min nTPM: 4.0
Sample B Female 4.0
Sample C Male 5.3
Sample D Male 4.1
Superior colliculi
nTPM: 6.1
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.3
Sample A Female 6.7
Sample B Female 6.5
Sample C Male 5.8
Sample D Male 5.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 95.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 95.4
Samples: 4

Max nTPM: 106.4
Min nTPM: 86.6
Sample A Male 106.4
Sample B Male 86.6
Sample C Female 87.4
Sample D Female 101.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
75079788 Antisense, RP_060412_02_F08, Mouse strain C57BL/6J (56 days, male) 0.7
69133830 Antisense, RP_050321_02_D02, Mouse strain C57BL/6J (56 days, male) 0.6

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