HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:42.7 nTPM
HPA Brain:47.6 nTPM
GTEx:42.7 nTPM
FANTOM5:138.5 Scaled Tags Per Million
Pig:132.0 nTPM
Mouse:29.0 nTPM
Allen mouse:2.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039758
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 47.6
Sample id Sample description nTPM
Hippocampus
nTPM: 42.6
1898 Male, age 80, left hemisphere 54.8
1911 Female, age 85, right hemisphere 49.8
1855 Male, age 76, left hemisphere 44.3
2621 Female, age 67, right hemisphere 40.5
2529 Female, age 94, left hemisphere 37.1
2148 Female, age 91, left hemisphere 28.9
Dentate gyrus
nTPM: 39.8
2010 Male, age 76, both hemispheres 49.4
1927 Female, age 91, both hemispheres 46.5
2530 Female, age 94, left hemisphere 41.4
2246 Female, age 85, both hemispheres 39.7
2528 Male, age 74, both hemispheres 31.9
2531 Female, age 67, both hemispheres 30.0
Entorhinal gyrus
nTPM: 36.4
1938 Female, age 85, left hemisphere 44.9
1787 Male, age 76, left hemisphere 40.2
2117 Female, age 91, right hemisphere 38.5
2764 Male, age 80, right hemisphere 34.9
2686 Male, age 75, right hemisphere 31.4
2613 Female, age 94, left hemisphere 28.7
Hippocampus, CA1
nTPM: 47.5
2749 Male, age 80, left hemisphere 70.0
1873 Female, age 85, both hemispheres 46.6
2045 Male, age 76, both hemispheres 43.8
2082 Female, age 91, right hemisphere 38.6
2527 Male, age 74, both hemispheres 38.4
Hippocampus, CA2
nTPM: 43.9
1892 Male, age 76, both hemispheres 51.7
2437 Female, age 94, left hemisphere 46.1
1963 Male, age 80, left hemisphere 44.1
2249 Male, age 74, both hemispheres 41.7
1940 Female, age 85, left hemisphere 41.1
2113 Female, age 91, right hemisphere 38.9
Hippocampus, CA3
nTPM: 47.6
2137 Male, age 80, left hemisphere 77.4
1867 Male, age 76, both hemispheres 60.0
2436 Male, age 74, both hemispheres 49.1
1891 Female, age 85, both hemispheres 44.2
2620 Female, age 94, left hemisphere 28.3
2861 Female, age 67, both hemispheres 26.2
Parahippocampal cortex
nTPM: 39.6
2018 Male, age 76, both hemispheres 55.8
1933 Female, age 85, both hemispheres 48.0
1850 Male, age 80, both hemispheres 47.2
2250 Female, age 67, right hemisphere 42.6
1990 Female, age 91, right hemisphere 39.0
2245 Female, age 91, both hemispheres 37.0
2693 Female, age 94, both hemispheres 33.4
2532 Female, age 72, left hemisphere 32.9
2692 Male, age 74, both hemispheres 32.7
2622 Female, age 67, right hemisphere 27.2
Perirhinal gyrus
nTPM: 41.6
1847 Female, age 91, left hemisphere 46.8
1794 Male, age 80, right hemisphere 44.4
1841 Female, age 85, right hemisphere 42.9
2848 Male, age 76, right hemisphere 37.3
2521 Female, age 94, right hemisphere 36.6
Subiculum
nTPM: 45.6
1901 Male, age 80, both hemispheres 59.8
2042 Male, age 76, both hemispheres 59.4
1977 Female, age 85, both hemispheres 45.0
2438 Female, age 94, left hemisphere 44.7
2729 Female, age 91, right hemisphere 34.5
2619 Male, age 74, both hemispheres 30.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 42.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 42.7
Samples: 197

Max nTPM: 81.9
Min nTPM: 26.0
Std nTPM: 9.2
Median nTPM: 40.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 81.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 73.6
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 68.8
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 67.9
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 65.9
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 63.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 63.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 62.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 61.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 61.6
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 60.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 138.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 138.5
FF:10169-103B7 60 years, female 170.3
FF:10153-102I9 76 years, female 106.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 132.0
Pig sample Sample description nTPM
Subiculum
nTPM: 96.7
Samples: 4

Max nTPM: 117.4
Min nTPM: 83.7
Sample A Female 117.4
Sample B Female 83.7
Sample C Male 94.0
Sample D Male 91.6
Dorsal hippocampus
nTPM: 132.0
Samples: 4

Max nTPM: 175.1
Min nTPM: 92.2
Sample A Female 175.1
Sample B Female 141.2
Sample C Male 119.5
Sample D Male 92.2
Entorhinal cortex
nTPM: 89.9
Samples: 4

Max nTPM: 105.2
Min nTPM: 63.5
Sample A Female 86.5
Sample B Female 105.2
Sample C Male 104.3
Sample D Male 63.5
Ventral hippocampus
nTPM: 131.3
Samples: 4

Max nTPM: 169.7
Min nTPM: 106.1
Sample A Female 169.7
Sample B Female 109.2
Sample C Male 106.1
Sample D Male 140.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 29.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 26.0
Samples: 4

Max nTPM: 27.3
Min nTPM: 24.3
Sample A Male 27.2
Sample B Male 25.1
Sample C Female 27.3
Sample D Female 24.3
Hippocampal formation
nTPM: 29.0
Samples: 4

Max nTPM: 30.0
Min nTPM: 27.7
Sample A Male 30.0
Sample B Male 27.7
Sample C Female 29.1
Sample D Female 29.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.7
72129283 Antisense, RP_051017_03_F04, Mouse strain C57BL/6J (56 days, male) 4.0
69117014 Antisense, RP_050321_01_E12, Mouse strain C57BL/6J (56 days, male) 1.5

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