MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.9 nTPM
HPA Brain:47.6 nTPM
GTEx:42.9 nTPM
FANTOM5:129.8 Scaled Tags Per Million
Pig:92.4 nTPM
Mouse:26.0 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.3
2411 Female, age 72, unknown 56.6
1870 Female, age 42, unknown 51.1
1830 Male, age 51, unknown 46.4
2019 Male, age 18, unknown 45.6
1833 Male, age 53, unknown 45.5
2586 Male, age 75, left hemisphere 45.3
1827 Male, age 72, unknown 40.5
2666 Male, age 74, left hemisphere 39.3
2219 Male, age 76, both hemispheres 36.2
2828 Female, age 72, unknown 36.1
Dorsal raphe nucleus
nTPM: 44.6
2016 Female, age 72, unknown 47.9
2047 Male, age 72, unknown 46.3
2750 Male, age 76, both hemispheres 44.7
2298 Female, age 72, unknown 42.8
1828 Male, age 53, unknown 41.4
Inferior colliculus
nTPM: 40.5
2097 Female, age 72, unknown 42.2
1848 Female, age 42, unknown 41.4
1890 Male, age 53, unknown 41.3
2849 Male, age 72, unknown 37.0
Median raphe nucleus
nTPM: 45.8
2220 Male, age 76, midline 45.8
Periaquaductal grey, anterior
nTPM: 44.5
1947 Male, age 18, unknown 47.4
2502 Female, age 75, unknown 46.0
1795 Male, age 51, unknown 40.0
Periaquaductal grey, dorsal
nTPM: 40.6
1840 Male, age 53, unknown 41.9
2850 Male, age 76, both hemispheres 41.8
2464 Female, age 72, unknown 41.2
1831 Male, age 72, unknown 37.4
Periaquaductal grey, lateral
nTPM: 38.8
2053 Male, age 18, unknown 46.4
2140 Male, age 76, both hemispheres 36.4
2272 Male, age 74, both hemispheres 33.5
Pretectal area
nTPM: 39.2
2224 Female, age 72, unknown 43.9
2007 Male, age 72, unknown 43.4
2825 Male, age 18, unknown 41.2
1815 Male, age 53, unknown 40.6
1944 Female, age 72, unknown 39.6
1816 Male, age 51, unknown 38.4
1817 Female, age 42, unknown 38.1
2316 Male, age 76, right hemisphere 37.9
2273 Male, age 74, both hemispheres 36.6
2407 Male, age 75, both hemispheres 36.3
2667 Female, age 75, unknown 35.3
Red nucleus
nTPM: 47.6
1821 Female, age 72, unknown 54.6
1904 Male, age 53, unknown 51.7
1954 Female, age 42, unknown 51.5
2503 Female, age 72, unknown 49.6
2584 Male, age 75, left hemisphere 49.0
1865 Male, age 51, unknown 48.6
2588 Male, age 74, left hemisphere 48.6
2725 Female, age 75, unknown 45.6
2769 Male, age 72, unknown 44.8
2227 Male, age 72, unknown 43.4
2823 Male, age 76, right hemisphere 42.8
2785 Male, age 18, unknown 40.8
Substantia nigra
nTPM: 46.2
2409 Female, age 72, unknown 52.5
2241 Male, age 72, unknown 52.2
2590 Female, age 75, unknown 51.3
1889 Female, age 72, unknown 47.3
2583 Male, age 75, right hemisphere 46.1
1916 Female, age 42, unknown 44.8
1851 Male, age 51, unknown 43.8
1941 Male, age 53, unknown 43.4
2665 Male, age 74, both hemispheres 42.0
2699 Male, age 18, unknown 38.6
Superior colliculus
nTPM: 42.0
2587 Male, age 74, left hemisphere 48.8
1995 Male, age 72, unknown 47.4
1913 Female, age 42, unknown 46.4
1839 Male, age 51, unknown 44.3
2668 Female, age 75, unknown 41.6
2261 Male, age 18, unknown 41.0
1895 Male, age 76, right hemisphere 40.8
2664 Male, age 75, both hemispheres 37.0
1796 Male, age 53, unknown 36.7
2087 Female, age 72, unknown 36.4
Ventral tegmental area
nTPM: 45.3
2410 Female, age 72, unknown 49.6
2223 Female, age 72, unknown 48.7
2021 Male, age 53, unknown 47.1
1942 Male, age 51, unknown 46.5
1915 Female, age 42, unknown 43.5
2218 Male, age 76, both hemispheres 36.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.9
Samples: 139

Max nTPM: 75.8
Min nTPM: 25.4
Std nTPM: 10.4
Median nTPM: 39.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 75.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 75.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 70.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 69.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 66.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 66.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 65.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 64.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 62.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 62.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 60.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 129.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 129.8
FF:10158-103A5 76 years, female 129.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 92.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 92.3
Samples: 4

Max nTPM: 114.4
Min nTPM: 70.3
Sample A Female 114.4
Sample B Female 92.8
Sample C Male 91.8
Sample D Male 70.3
Midbrain
nTPM: 89.2
Samples: 4

Max nTPM: 109.6
Min nTPM: 69.8
Sample A Female 109.6
Sample B Female 97.0
Sample C Male 80.4
Sample D Male 69.8
Periaqueductal gray
nTPM: 78.7
Samples: 3

Max nTPM: 80.6
Min nTPM: 76.4
Sample B Female 80.6
Sample C Male 79.2
Sample D Male 76.4
Superior colliculi
nTPM: 86.1
Samples: 4

Max nTPM: 104.7
Min nTPM: 71.5
Sample A Female 104.7
Sample B Female 84.5
Sample C Male 83.5
Sample D Male 71.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.0
Samples: 4

Max nTPM: 27.6
Min nTPM: 25.1
Sample A Male 25.1
Sample B Male 25.7
Sample C Female 27.6
Sample D Female 25.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
72129283 Antisense, RP_051017_03_F04, Mouse strain C57BL/6J (56 days, male) 1.8
69117014 Antisense, RP_050321_01_E12, Mouse strain C57BL/6J (56 days, male) 0.7

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